Results 101 - 120 of 270 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 27504 | 0.69 | 0.697986 |
Target: 5'- gAGGC-CUCGgccgccgCCGCGGCgGCGGCg -3' miRNA: 3'- -UCUGcGAGUacaa---GGUGCCGgCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 71461 | 0.69 | 0.677678 |
Target: 5'- cGGGCGCUUccggGggCaugGCGGCCGCGAg -3' miRNA: 3'- -UCUGCGAGua--CaaGg--UGCCGGCGCUg -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 62065 | 0.69 | 0.718072 |
Target: 5'- cGGAUGCgcgCGUcgacUUCCGCGcCCGCGGCg -3' miRNA: 3'- -UCUGCGa--GUAc---AAGGUGCcGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 21720 | 0.69 | 0.677678 |
Target: 5'- uGGACGCggCGccguUGUUCCccccgacgcuacGCuGCCGCGACg -3' miRNA: 3'- -UCUGCGa-GU----ACAAGG------------UGcCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 121970 | 0.69 | 0.696975 |
Target: 5'- cGGugGCgugaacugCGUGgcugCCAgcagcccaaccgcCGGCCGCGGCa -3' miRNA: 3'- -UCugCGa-------GUACaa--GGU-------------GCCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 69933 | 0.69 | 0.695965 |
Target: 5'- aAGGCGguaaUCAUGcgcacguuggcgUCCGCGGgCGCGACc -3' miRNA: 3'- -UCUGCg---AGUACa-----------AGGUGCCgGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 81777 | 0.69 | 0.677678 |
Target: 5'- -cGCGCUCGcgGUgcCCGCGGCCGCcaGCa -3' miRNA: 3'- ucUGCGAGUa-CAa-GGUGCCGGCGc-UG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 109925 | 0.69 | 0.677678 |
Target: 5'- cGACGCcgaUCAUGcUCUuugcCGGCCGCGcGCg -3' miRNA: 3'- uCUGCG---AGUACaAGGu---GCCGGCGC-UG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 93784 | 0.69 | 0.677678 |
Target: 5'- cGcCGCUUGgcugGUUCCgcGCGGCCGCG-Cg -3' miRNA: 3'- uCuGCGAGUa---CAAGG--UGCCGGCGCuG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 122027 | 0.69 | 0.697986 |
Target: 5'- cGGCGCcgccCGcGcgCCcCGGCCGCGACa -3' miRNA: 3'- uCUGCGa---GUaCaaGGuGCCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 113098 | 0.69 | 0.705045 |
Target: 5'- gAGAUGUauacuUCAUGcgcacgcugugcgcUUCCACGGUCGcCGGCg -3' miRNA: 3'- -UCUGCG-----AGUAC--------------AAGGUGCCGGC-GCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 106419 | 0.69 | 0.708062 |
Target: 5'- cGACGCUgc----CCGCGGCCGCGcCg -3' miRNA: 3'- uCUGCGAguacaaGGUGCCGGCGCuG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 107790 | 0.69 | 0.677678 |
Target: 5'- gGGGCaGCUgGggcugCgGCGGCCGCGGCa -3' miRNA: 3'- -UCUG-CGAgUacaa-GgUGCCGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 44940 | 0.69 | 0.697986 |
Target: 5'- gGGGCGCUCGggcUGggCgACGGCgCGCcGCa -3' miRNA: 3'- -UCUGCGAGU---ACaaGgUGCCG-GCGcUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 42047 | 0.69 | 0.718072 |
Target: 5'- uAGACugGCUCGUGUgCCugGggcuggugccGCUGCGGCg -3' miRNA: 3'- -UCUG--CGAGUACAaGGugC----------CGGCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 107317 | 0.69 | 0.708062 |
Target: 5'- --cCGCUCAUGUcagCCGCGcgugcGCCGgGGCg -3' miRNA: 3'- ucuGCGAGUACAa--GGUGC-----CGGCgCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 22123 | 0.68 | 0.728008 |
Target: 5'- cGGGCGCgcccUGggCCcgGCGGCgGCGGCg -3' miRNA: 3'- -UCUGCGagu-ACaaGG--UGCCGgCGCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 2543 | 0.68 | 0.776248 |
Target: 5'- cGGCGCUCccg--CCGCcgGGCCGgGGCg -3' miRNA: 3'- uCUGCGAGuacaaGGUG--CCGGCgCUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 27341 | 0.68 | 0.776248 |
Target: 5'- -cGCGCUUug---CCGCGGCCGCcGCa -3' miRNA: 3'- ucUGCGAGuacaaGGUGCCGGCGcUG- -5' |
|||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 52245 | 0.68 | 0.776248 |
Target: 5'- cGGGCGC-CGcGcgCCGCGGCUuggcuGCGGCg -3' miRNA: 3'- -UCUGCGaGUaCaaGGUGCCGG-----CGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home