Results 101 - 120 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 27504 | 0.69 | 0.697986 |
Target: 5'- gAGGC-CUCGgccgccgCCGCGGCgGCGGCg -3' miRNA: 3'- -UCUGcGAGUacaa---GGUGCCGgCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 44940 | 0.69 | 0.697986 |
Target: 5'- gGGGCGCUCGggcUGggCgACGGCgCGCcGCa -3' miRNA: 3'- -UCUGCGAGU---ACaaGgUGCCG-GCGcUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 31420 | 0.69 | 0.697986 |
Target: 5'- cGGCGC-CGgcgGgcggcggCCgGCGGCCGCGGCg -3' miRNA: 3'- uCUGCGaGUa--Caa-----GG-UGCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 122027 | 0.69 | 0.697986 |
Target: 5'- cGGCGCcgccCGcGcgCCcCGGCCGCGACa -3' miRNA: 3'- uCUGCGa---GUaCaaGGuGCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 113098 | 0.69 | 0.705045 |
Target: 5'- gAGAUGUauacuUCAUGcgcacgcugugcgcUUCCACGGUCGcCGGCg -3' miRNA: 3'- -UCUGCG-----AGUAC--------------AAGGUGCCGGC-GCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 18229 | 0.69 | 0.706051 |
Target: 5'- cGGCGgUCGUGcgcgcggguggaUCCAagaUGGCCGCGACc -3' miRNA: 3'- uCUGCgAGUACa-----------AGGU---GCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 106419 | 0.69 | 0.708062 |
Target: 5'- cGACGCUgc----CCGCGGCCGCGcCg -3' miRNA: 3'- uCUGCGAguacaaGGUGCCGGCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 107317 | 0.69 | 0.708062 |
Target: 5'- --cCGCUCAUGUcagCCGCGcgugcGCCGgGGCg -3' miRNA: 3'- ucuGCGAGUACAa--GGUGC-----CGGCgCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 63992 | 0.69 | 0.708062 |
Target: 5'- cGGCGCUCAaGUgCCGCGaGCUcuacccggGCGGCg -3' miRNA: 3'- uCUGCGAGUaCAaGGUGC-CGG--------CGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 30021 | 0.69 | 0.708062 |
Target: 5'- -aGCGCUgGccgcgUCUAUGGCCGCGGCc -3' miRNA: 3'- ucUGCGAgUaca--AGGUGCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 83217 | 0.69 | 0.718072 |
Target: 5'- uGGGCccguGUUUGUGUUugacgCCGCGGCCGgGGCg -3' miRNA: 3'- -UCUG----CGAGUACAA-----GGUGCCGGCgCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 13935 | 0.69 | 0.718072 |
Target: 5'- cGACgGCgUCAUGcgcgagCUGCGGCUGCGGCc -3' miRNA: 3'- uCUG-CG-AGUACaa----GGUGCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 20449 | 0.69 | 0.718072 |
Target: 5'- cGGCGCggaagGcgUCCAgcaGGCCGCGGCg -3' miRNA: 3'- uCUGCGagua-Ca-AGGUg--CCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 90260 | 0.69 | 0.718072 |
Target: 5'- uGACGCgcucGUUCaCGCGGCCuuugaGCGGCg -3' miRNA: 3'- uCUGCGaguaCAAG-GUGCCGG-----CGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 62065 | 0.69 | 0.718072 |
Target: 5'- cGGAUGCgcgCGUcgacUUCCGCGcCCGCGGCg -3' miRNA: 3'- -UCUGCGa--GUAc---AAGGUGCcGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 42047 | 0.69 | 0.718072 |
Target: 5'- uAGACugGCUCGUGUgCCugGggcuggugccGCUGCGGCg -3' miRNA: 3'- -UCUG--CGAGUACAaGGugC----------CGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 22123 | 0.68 | 0.728008 |
Target: 5'- cGGGCGCgcccUGggCCcgGCGGCgGCGGCg -3' miRNA: 3'- -UCUGCGagu-ACaaGG--UGCCGgCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 58272 | 0.68 | 0.728008 |
Target: 5'- cAGGC-CUcCAUGUgCU-CGGCCGCGGCg -3' miRNA: 3'- -UCUGcGA-GUACAaGGuGCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 124936 | 0.68 | 0.728008 |
Target: 5'- cGGGCGCgcccUGggCCcgGCGGCgGCGGCg -3' miRNA: 3'- -UCUGCGagu-ACaaGG--UGCCGgCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 71559 | 0.68 | 0.728008 |
Target: 5'- gAGGCGgUCA---UCCACGGCaGCGAg -3' miRNA: 3'- -UCUGCgAGUacaAGGUGCCGgCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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