miRNA display CGI


Results 141 - 160 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 98100 0.68 0.766823
Target:  5'- aAGGCGCcCAUGag-CGCGGCCaCGACc -3'
miRNA:   3'- -UCUGCGaGUACaagGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 49051 0.68 0.766823
Target:  5'- uGGCGCgCAgc--UCACGGCCGCGGg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 86836 0.68 0.770608
Target:  5'- cGAUGUUCGccuacgucaagcccaUGagCCACGGCCcCGACa -3'
miRNA:   3'- uCUGCGAGU---------------ACaaGGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 84974 0.68 0.775311
Target:  5'- -cACGCUCGUGc-UCAUGGCCGCcucgaucGACa -3'
miRNA:   3'- ucUGCGAGUACaaGGUGCCGGCG-------CUG- -5'
6345 3' -56.7 NC_001847.1 + 68765 0.68 0.776248
Target:  5'- cGACGCUgugGUaggcgagcUCCAUcGCCGCGGCg -3'
miRNA:   3'- uCUGCGAguaCA--------AGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 2543 0.68 0.776248
Target:  5'- cGGCGCUCccg--CCGCcgGGCCGgGGCg -3'
miRNA:   3'- uCUGCGAGuacaaGGUG--CCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 27341 0.68 0.776248
Target:  5'- -cGCGCUUug---CCGCGGCCGCcGCa -3'
miRNA:   3'- ucUGCGAGuacaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 105356 0.68 0.776248
Target:  5'- cGGCGCUCccg--CCGCcgGGCCGgGGCg -3'
miRNA:   3'- uCUGCGAGuacaaGGUG--CCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 52245 0.68 0.776248
Target:  5'- cGGGCGC-CGcGcgCCGCGGCUuggcuGCGGCg -3'
miRNA:   3'- -UCUGCGaGUaCaaGGUGCCGG-----CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 5370 0.68 0.776248
Target:  5'- cGGGCccagGCUCcgGcggUCCgaGCGGCCgGCGGCa -3'
miRNA:   3'- -UCUG----CGAGuaCa--AGG--UGCCGG-CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 56786 0.68 0.776248
Target:  5'- cGGcACGCUCGaggGgcugUUCGCcGCCGCGGCg -3'
miRNA:   3'- -UC-UGCGAGUa--Ca---AGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 74112 0.68 0.776248
Target:  5'- --cCGCUgCcgGUUCC-CGGCCGUGGu -3'
miRNA:   3'- ucuGCGA-GuaCAAGGuGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 48612 0.68 0.776248
Target:  5'- -cGCGCUCGgccgugccgaUGUgaacgCCGCGGCgGCGGg -3'
miRNA:   3'- ucUGCGAGU----------ACAa----GGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 106232 0.68 0.776248
Target:  5'- cGGCgGCUCAUGg-CCACgcaGGCCGCcACg -3'
miRNA:   3'- uCUG-CGAGUACaaGGUG---CCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 130154 0.68 0.776248
Target:  5'- -cGCGCUUug---CCGCGGCCGCcGCa -3'
miRNA:   3'- ucUGCGAGuacaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 3419 0.68 0.776248
Target:  5'- cGGCgGCUCAUGg-CCACgcaGGCCGCcACg -3'
miRNA:   3'- uCUG-CGAGUACaaGGUG---CCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 134477 0.67 0.781841
Target:  5'- uAGGCGCggccaacgaagugCAcggguguagugUGggCCguGCGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa------------GU-----------ACaaGG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 94681 0.67 0.785543
Target:  5'- aGGACGCUUAUG--CC-CGuGCCGCG-Ca -3'
miRNA:   3'- -UCUGCGAGUACaaGGuGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 584 0.67 0.785543
Target:  5'- cGGCGC-CggGUccuggcccUCCGCGGCCGCu-- -3'
miRNA:   3'- uCUGCGaGuaCA--------AGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 99686 0.67 0.785543
Target:  5'- -aGCGcCUCucgcgCCGCGGCCGCGuCg -3'
miRNA:   3'- ucUGC-GAGuacaaGGUGCCGGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.