Results 121 - 140 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6345 | 3' | -56.7 | NC_001847.1 | + | 52245 | 0.68 | 0.776248 |
Target: 5'- cGGGCGC-CGcGcgCCGCGGCUuggcuGCGGCg -3' miRNA: 3'- -UCUGCGaGUaCaaGGUGCCGG-----CGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 3419 | 0.68 | 0.776248 |
Target: 5'- cGGCgGCUCAUGg-CCACgcaGGCCGCcACg -3' miRNA: 3'- uCUG-CGAGUACaaGGUG---CCGGCGcUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 105356 | 0.68 | 0.776248 |
Target: 5'- cGGCGCUCccg--CCGCcgGGCCGgGGCg -3' miRNA: 3'- uCUGCGAGuacaaGGUG--CCGGCgCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 5370 | 0.68 | 0.776248 |
Target: 5'- cGGGCccagGCUCcgGcggUCCgaGCGGCCgGCGGCa -3' miRNA: 3'- -UCUG----CGAGuaCa--AGG--UGCCGG-CGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 56786 | 0.68 | 0.776248 |
Target: 5'- cGGcACGCUCGaggGgcugUUCGCcGCCGCGGCg -3' miRNA: 3'- -UC-UGCGAGUa--Ca---AGGUGcCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 74112 | 0.68 | 0.776248 |
Target: 5'- --cCGCUgCcgGUUCC-CGGCCGUGGu -3' miRNA: 3'- ucuGCGA-GuaCAAGGuGCCGGCGCUg -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 84974 | 0.68 | 0.775311 |
Target: 5'- -cACGCUCGUGc-UCAUGGCCGCcucgaucGACa -3' miRNA: 3'- ucUGCGAGUACaaGGUGCCGGCG-------CUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 86836 | 0.68 | 0.770608 |
Target: 5'- cGAUGUUCGccuacgucaagcccaUGagCCACGGCCcCGACa -3' miRNA: 3'- uCUGCGAGU---------------ACaaGGUGCCGGcGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 102226 | 0.68 | 0.766823 |
Target: 5'- cGGccuCGCUCccG-UCCGCGGCCcCGGCu -3' miRNA: 3'- -UCu--GCGAGuaCaAGGUGCCGGcGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 98100 | 0.68 | 0.766823 |
Target: 5'- aAGGCGCcCAUGag-CGCGGCCaCGACc -3' miRNA: 3'- -UCUGCGaGUACaagGUGCCGGcGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 49051 | 0.68 | 0.766823 |
Target: 5'- uGGCGCgCAgc--UCACGGCCGCGGg -3' miRNA: 3'- uCUGCGaGUacaaGGUGCCGGCGCUg -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 132550 | 0.68 | 0.766823 |
Target: 5'- cGGCggGCUCGcGU---GCGGCCGCGGCg -3' miRNA: 3'- uCUG--CGAGUaCAaggUGCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 27316 | 0.68 | 0.766823 |
Target: 5'- cGGCGggCGUG-UCCACGGCaaucugccggggCGUGACg -3' miRNA: 3'- uCUGCgaGUACaAGGUGCCG------------GCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 58208 | 0.68 | 0.761109 |
Target: 5'- cAGGCGCUCcgGgcggaucugCCcgccgggcggcagcgGCGGCgCGCGACc -3' miRNA: 3'- -UCUGCGAGuaCaa-------GG---------------UGCCG-GCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 18784 | 0.68 | 0.757277 |
Target: 5'- cGACaGCgCGaGcUCCGCGGCgGCGGCg -3' miRNA: 3'- uCUG-CGaGUaCaAGGUGCCGgCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 73014 | 0.68 | 0.757277 |
Target: 5'- cGGGCGCg---GaaCCA-GGCCGCGGCa -3' miRNA: 3'- -UCUGCGaguaCaaGGUgCCGGCGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 117021 | 0.68 | 0.757277 |
Target: 5'- uGGGCGCUCcUGUcugCC-CGGCgGgGGCu -3' miRNA: 3'- -UCUGCGAGuACAa--GGuGCCGgCgCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 13666 | 0.68 | 0.757277 |
Target: 5'- cGGCGCg-GUGUggaaCCACGaGCCGCG-Cg -3' miRNA: 3'- uCUGCGagUACAa---GGUGC-CGGCGCuG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 112649 | 0.68 | 0.751496 |
Target: 5'- cGcCGC-CAUGagCCACGGCCagccuugccccaccuGCGACg -3' miRNA: 3'- uCuGCGaGUACaaGGUGCCGG---------------CGCUG- -5' |
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6345 | 3' | -56.7 | NC_001847.1 | + | 9836 | 0.68 | 0.751496 |
Target: 5'- cGcCGC-CAUGagCCACGGCCagccuugccccaccuGCGACg -3' miRNA: 3'- uCuGCGaGUACaaGGUGCCGG---------------CGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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