miRNA display CGI


Results 81 - 100 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 37568 0.72 0.544942
Target:  5'- aAGACGCggcggCGcUGgccgCUGCGGCUGCGGCg -3'
miRNA:   3'- -UCUGCGa----GU-ACaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 38963 0.73 0.47662
Target:  5'- -aGCGC-CAUGg-CgGCGGCCGCGGCg -3'
miRNA:   3'- ucUGCGaGUACaaGgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 40897 0.66 0.860386
Target:  5'- aGGGCGCgagccgcUCCACGGCcCGCG-Cg -3'
miRNA:   3'- -UCUGCGaguaca-AGGUGCCG-GCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 41011 0.66 0.854175
Target:  5'- cGGCG-UCGUGccgUCCugcaacggGCGcGCCGCGGCg -3'
miRNA:   3'- uCUGCgAGUACa--AGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 41341 0.66 0.846229
Target:  5'- cGGgGaCUCGgccgCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUgC-GAGUacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 41496 0.71 0.60586
Target:  5'- -cGCGCUCcaugaccgagcGUGcagacgUCCGCGGCCGCGcCg -3'
miRNA:   3'- ucUGCGAG-----------UACa-----AGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 41607 0.66 0.838086
Target:  5'- cGugGCgu-UGUUCUgcuccgccgugAUGGCCGCGAg -3'
miRNA:   3'- uCugCGaguACAAGG-----------UGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 42047 0.69 0.718072
Target:  5'- uAGACugGCUCGUGUgCCugGggcuggugccGCUGCGGCg -3'
miRNA:   3'- -UCUG--CGAGUACAaGGugC----------CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 42340 0.79 0.21082
Target:  5'- uGGGCGCcCGUGUggCGCGGCgGCGACg -3'
miRNA:   3'- -UCUGCGaGUACAagGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 43814 0.66 0.861918
Target:  5'- uGACGCUCG------ACGGCCGCGcCg -3'
miRNA:   3'- uCUGCGAGUacaaggUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 44388 0.69 0.678698
Target:  5'- aGGGCGCUCccGcucccggggcccggCCACGcGCCGCGAg -3'
miRNA:   3'- -UCUGCGAGuaCaa------------GGUGC-CGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 44900 0.67 0.829755
Target:  5'- -aGCGCgUCAcag-CCGCGGCgGCGGCc -3'
miRNA:   3'- ucUGCG-AGUacaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 44940 0.69 0.697986
Target:  5'- gGGGCGCUCGggcUGggCgACGGCgCGCcGCa -3'
miRNA:   3'- -UCUGCGAGU---ACaaGgUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 45860 0.67 0.821243
Target:  5'- gAGGC-CUCGg---CCGCGGCgCGCGAa -3'
miRNA:   3'- -UCUGcGAGUacaaGGUGCCG-GCGCUg -5'
6345 3' -56.7 NC_001847.1 + 47206 0.67 0.821243
Target:  5'- -cACGCUCAccgcgUgCGCGGCCGCGcCc -3'
miRNA:   3'- ucUGCGAGUaca--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 47433 0.66 0.854175
Target:  5'- cGACGUcgUCGgcuucgCCGCcGCCGCGGCg -3'
miRNA:   3'- uCUGCG--AGUacaa--GGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 47557 0.67 0.829755
Target:  5'- cGGGCGCggg-GagCCcgGCGGCCGCGcACg -3'
miRNA:   3'- -UCUGCGaguaCaaGG--UGCCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 47847 0.67 0.794699
Target:  5'- -cGCGCaaaUCGg---CCGCGGCCGCGGg -3'
miRNA:   3'- ucUGCG---AGUacaaGGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 48612 0.68 0.776248
Target:  5'- -cGCGCUCGgccgugccgaUGUgaacgCCGCGGCgGCGGg -3'
miRNA:   3'- ucUGCGAGU----------ACAa----GGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 49051 0.68 0.766823
Target:  5'- uGGCGCgCAgc--UCACGGCCGCGGg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.