miRNA display CGI


Results 101 - 120 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 51072 0.66 0.838086
Target:  5'- gAGGCGUUCGUG---CGCGGgcuggucgaggaCCGCGACu -3'
miRNA:   3'- -UCUGCGAGUACaagGUGCC------------GGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 51379 0.82 0.140499
Target:  5'- uGACGCUCGcGgaggCCGCGGUCGCGGCg -3'
miRNA:   3'- uCUGCGAGUaCaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 51899 0.67 0.829755
Target:  5'- -cGCGCUUucgGccgCCGCcccGGCCGCGGCg -3'
miRNA:   3'- ucUGCGAGua-Caa-GGUG---CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 52084 0.66 0.838086
Target:  5'- -uGCGCUCuucggCCGC-GCCGCGGCc -3'
miRNA:   3'- ucUGCGAGuacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 52245 0.68 0.776248
Target:  5'- cGGGCGC-CGcGcgCCGCGGCUuggcuGCGGCg -3'
miRNA:   3'- -UCUGCGaGUaCaaGGUGCCGG-----CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 52789 0.71 0.554983
Target:  5'- -cGCGCUCAUGUgcagugcgcCCugGcGCCGCGcACa -3'
miRNA:   3'- ucUGCGAGUACAa--------GGugC-CGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 52937 0.7 0.646955
Target:  5'- uGGCGCg---GUUCgACcgaGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaguaCAAGgUG---CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 52992 0.67 0.79379
Target:  5'- gGGACGCgcaggCAUGgcggagCCgacagcgGCGGCCGCuGCg -3'
miRNA:   3'- -UCUGCGa----GUACaa----GG-------UGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 55921 0.71 0.585401
Target:  5'- -cGCGCcCGUGaUCCGCGGCCgGCGuCg -3'
miRNA:   3'- ucUGCGaGUACaAGGUGCCGG-CGCuG- -5'
6345 3' -56.7 NC_001847.1 + 56786 0.68 0.776248
Target:  5'- cGGcACGCUCGaggGgcugUUCGCcGCCGCGGCg -3'
miRNA:   3'- -UC-UGCGAGUa--Ca---AGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 57118 0.75 0.370602
Target:  5'- -cGCGCgCAUGUUgggggacgCCAUGGCCGUGACg -3'
miRNA:   3'- ucUGCGaGUACAA--------GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 58208 0.68 0.761109
Target:  5'- cAGGCGCUCcgGgcggaucugCCcgccgggcggcagcgGCGGCgCGCGACc -3'
miRNA:   3'- -UCUGCGAGuaCaa-------GG---------------UGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 58272 0.68 0.728008
Target:  5'- cAGGC-CUcCAUGUgCU-CGGCCGCGGCg -3'
miRNA:   3'- -UCUGcGA-GUACAaGGuGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 59586 0.66 0.846229
Target:  5'- cGGCGCUCAcGggCagcuCGGCCGCcGAg -3'
miRNA:   3'- uCUGCGAGUaCaaGgu--GCCGGCG-CUg -5'
6345 3' -56.7 NC_001847.1 + 60626 0.67 0.82722
Target:  5'- uGACGUUgaagacCAUGUUCagcacgagggugcgCGCGGCCGCGuCc -3'
miRNA:   3'- uCUGCGA------GUACAAG--------------GUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 61423 0.66 0.869452
Target:  5'- cGGCcCUCGacgcCCGCGGCCGCGcCg -3'
miRNA:   3'- uCUGcGAGUacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 62065 0.69 0.718072
Target:  5'- cGGAUGCgcgCGUcgacUUCCGCGcCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUAc---AAGGUGCcGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 62144 0.66 0.854175
Target:  5'- cGGCGUgcgCAUGg-CCGCGGCgGCGu- -3'
miRNA:   3'- uCUGCGa--GUACaaGGUGCCGgCGCug -5'
6345 3' -56.7 NC_001847.1 + 62712 0.76 0.346727
Target:  5'- -aGCGUgcgCAUGUUCCgcguuGCGGCCGUGGCc -3'
miRNA:   3'- ucUGCGa--GUACAAGG-----UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 63357 0.66 0.869452
Target:  5'- gGGGCGCgugcggCAcugUGUacucgUCCACGaGCCGCcGCa -3'
miRNA:   3'- -UCUGCGa-----GU---ACA-----AGGUGC-CGGCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.