miRNA display CGI


Results 121 - 140 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 63579 0.66 0.854175
Target:  5'- uGACcCUCGUGUUCgACcgccaccccguGGCCGCGuGCc -3'
miRNA:   3'- uCUGcGAGUACAAGgUG-----------CCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 63663 0.67 0.812558
Target:  5'- aAGAucUGCUCAUGc-UCGCGGCCGCc-- -3'
miRNA:   3'- -UCU--GCGAGUACaaGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 63862 0.67 0.812558
Target:  5'- gGGGgGCgCAUGcgCgACGGCUGgGACg -3'
miRNA:   3'- -UCUgCGaGUACaaGgUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 63992 0.69 0.708062
Target:  5'- cGGCGCUCAaGUgCCGCGaGCUcuacccggGCGGCg -3'
miRNA:   3'- uCUGCGAGUaCAaGGUGC-CGG--------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 64434 0.66 0.838086
Target:  5'- cGGCGCgUCGUagUCgGCGGCCaCGGCc -3'
miRNA:   3'- uCUGCG-AGUAcaAGgUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 64686 0.66 0.838086
Target:  5'- gGGACaC-CAUGUUUuuccugccgcgCGCGGCCGuCGACa -3'
miRNA:   3'- -UCUGcGaGUACAAG-----------GUGCCGGC-GCUG- -5'
6345 3' -56.7 NC_001847.1 + 64830 0.66 0.838086
Target:  5'- cGGGCGCuUCAgc-UCCgagaccagcgcgGCGcGCCGCGACc -3'
miRNA:   3'- -UCUGCG-AGUacaAGG------------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 65423 0.7 0.657219
Target:  5'- uGAUGCUCcgGgaggcggcagCCGCGcGCCGCGGa -3'
miRNA:   3'- uCUGCGAGuaCaa--------GGUGC-CGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 66701 0.66 0.854175
Target:  5'- cGGGCGCggacc-UCUGCGGCCGCuucGACg -3'
miRNA:   3'- -UCUGCGaguacaAGGUGCCGGCG---CUG- -5'
6345 3' -56.7 NC_001847.1 + 67281 0.66 0.869452
Target:  5'- gAGGCGCgCggGgaCUuggUGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGaGuaCaaGGu--GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 67443 0.7 0.667463
Target:  5'- cGGCGgUCAUcucgaggUCCagcgcgcgcgcgGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCgAGUAca-----AGG------------UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 68765 0.68 0.776248
Target:  5'- cGACGCUgugGUaggcgagcUCCAUcGCCGCGGCg -3'
miRNA:   3'- uCUGCGAguaCA--------AGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 69417 0.67 0.785543
Target:  5'- cGGCGC---UGUUCCuGCGGCucagCGCGGCg -3'
miRNA:   3'- uCUGCGaguACAAGG-UGCCG----GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 69701 0.83 0.123361
Target:  5'- cGGCGCUCGg--UCCGCGGCgCGCGGCu -3'
miRNA:   3'- uCUGCGAGUacaAGGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 69933 0.69 0.695965
Target:  5'- aAGGCGguaaUCAUGcgcacguuggcgUCCGCGGgCGCGACc -3'
miRNA:   3'- -UCUGCg---AGUACa-----------AGGUGCCgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 70011 0.7 0.671553
Target:  5'- gAGACGCUCAggaagCCGagccccaccgccagcCGaGCCGCGGCu -3'
miRNA:   3'- -UCUGCGAGUacaa-GGU---------------GC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 70412 0.73 0.448649
Target:  5'- cGGAC-CUCGUGggcUgCACGGCCGCGuCg -3'
miRNA:   3'- -UCUGcGAGUACa--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 70564 0.67 0.821243
Target:  5'- -cGCGCUCaAUGccCCGCGGCC-CGAg -3'
miRNA:   3'- ucUGCGAG-UACaaGGUGCCGGcGCUg -5'
6345 3' -56.7 NC_001847.1 + 71461 0.69 0.677678
Target:  5'- cGGGCGCUUccggGggCaugGCGGCCGCGAg -3'
miRNA:   3'- -UCUGCGAGua--CaaGg--UGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 71559 0.68 0.728008
Target:  5'- gAGGCGgUCA---UCCACGGCaGCGAg -3'
miRNA:   3'- -UCUGCgAGUacaAGGUGCCGgCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.