miRNA display CGI


Results 141 - 160 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 71960 0.66 0.846229
Target:  5'- ---gGCUCGg---CCAUGGCgCGCGACc -3'
miRNA:   3'- ucugCGAGUacaaGGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 72412 0.69 0.691914
Target:  5'- cGACGCggggacggCCACGGCCGCaACg -3'
miRNA:   3'- uCUGCGaguacaa-GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 73014 0.68 0.757277
Target:  5'- cGGGCGCg---GaaCCA-GGCCGCGGCa -3'
miRNA:   3'- -UCUGCGaguaCaaGGUgCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73284 0.7 0.656193
Target:  5'- cGGGCGCUCGgcaggCGCGGCCuacgccgGCGACg -3'
miRNA:   3'- -UCUGCGAGUacaagGUGCCGG-------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73325 0.73 0.448649
Target:  5'- cGGACGCcgacgaccUCAUGUUcgaCCAUGGCCaggGCGACc -3'
miRNA:   3'- -UCUGCG--------AGUACAA---GGUGCCGG---CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73472 0.74 0.429619
Target:  5'- uGGGCGCaugucucgaaccuUCAUGgcggCCGCGGUgGCGGCg -3'
miRNA:   3'- -UCUGCG-------------AGUACaa--GGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73874 0.66 0.869452
Target:  5'- gGGGCGCgUCA-GUUCCGcCGGCgccccgcgcaGCGAUg -3'
miRNA:   3'- -UCUGCG-AGUaCAAGGU-GCCGg---------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 74112 0.68 0.776248
Target:  5'- --cCGCUgCcgGUUCC-CGGCCGUGGu -3'
miRNA:   3'- ucuGCGA-GuaCAAGGuGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 74386 0.67 0.803706
Target:  5'- gAGGCGCUgGgGgaCCgcGCGGCCGCcGCg -3'
miRNA:   3'- -UCUGCGAgUaCaaGG--UGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 75701 0.7 0.636678
Target:  5'- gAGcCGCUCGgg--CCACgGGCCGCGGg -3'
miRNA:   3'- -UCuGCGAGUacaaGGUG-CCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 75770 0.67 0.821243
Target:  5'- -cGCGCggGUGaa-CACGGCCGCGGg -3'
miRNA:   3'- ucUGCGagUACaagGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 76400 0.7 0.626399
Target:  5'- gGGGCGC-CggGggCCGCGGCgGgGGCa -3'
miRNA:   3'- -UCUGCGaGuaCaaGGUGCCGgCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 76469 0.72 0.515199
Target:  5'- cAGACGCgc---UUCCACGGCaGCGGCg -3'
miRNA:   3'- -UCUGCGaguacAAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 77267 0.66 0.854175
Target:  5'- cGGGCGacaccCUCGUGg-CgACGGCgGCGACc -3'
miRNA:   3'- -UCUGC-----GAGUACaaGgUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 77552 0.76 0.31664
Target:  5'- uGGCGCacccUCGUGcgcuUUCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUGCG----AGUAC----AAGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 77894 0.67 0.812558
Target:  5'- -cGCGCUC-UGcgCgGCGGCgGUGGCg -3'
miRNA:   3'- ucUGCGAGuACaaGgUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 78334 0.67 0.812558
Target:  5'- cGGGCccgGCUUggGcgCCGCGGCgGCGAa -3'
miRNA:   3'- -UCUG---CGAGuaCaaGGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 78528 0.66 0.861918
Target:  5'- -cGCGCUCGa---CCGCGGCCuCGGCc -3'
miRNA:   3'- ucUGCGAGUacaaGGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 79185 0.66 0.838086
Target:  5'- cGGACGCggucgcgCggGUgcgcaUUCugGGCuCGCGACg -3'
miRNA:   3'- -UCUGCGa------GuaCA-----AGGugCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 80150 0.66 0.861918
Target:  5'- -aGCGCg-GUGUUUgGCGGCUGCG-Cg -3'
miRNA:   3'- ucUGCGagUACAAGgUGCCGGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.