miRNA display CGI


Results 161 - 180 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 80484 0.66 0.854175
Target:  5'- -cGCGCUCcccGUUCCGCaGC-GCGGCg -3'
miRNA:   3'- ucUGCGAGua-CAAGGUGcCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 81777 0.69 0.677678
Target:  5'- -cGCGCUCGcgGUgcCCGCGGCCGCcaGCa -3'
miRNA:   3'- ucUGCGAGUa-CAa-GGUGCCGGCGc-UG- -5'
6345 3' -56.7 NC_001847.1 + 82885 0.73 0.448649
Target:  5'- cGGGCGCgccgCAgccaagCCGCGGCgCGCGGCg -3'
miRNA:   3'- -UCUGCGa---GUacaa--GGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 83041 0.75 0.378806
Target:  5'- cGGcCGCUaGUGcgCUugGGCCGCGGCg -3'
miRNA:   3'- -UCuGCGAgUACaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 83217 0.69 0.718072
Target:  5'- uGGGCccguGUUUGUGUUugacgCCGCGGCCGgGGCg -3'
miRNA:   3'- -UCUG----CGAGUACAA-----GGUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 84224 0.68 0.74762
Target:  5'- --cCGCgagCAcGUuuUCCACGGCCGCG-Cg -3'
miRNA:   3'- ucuGCGa--GUaCA--AGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 84974 0.68 0.775311
Target:  5'- -cACGCUCGUGc-UCAUGGCCGCcucgaucGACa -3'
miRNA:   3'- ucUGCGAGUACaaGGUGCCGGCG-------CUG- -5'
6345 3' -56.7 NC_001847.1 + 85430 0.67 0.794699
Target:  5'- cGGCGa--AUGaUUauaGCGGCCGCGACg -3'
miRNA:   3'- uCUGCgagUACaAGg--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 85647 0.66 0.854175
Target:  5'- cAGGCGCgcgUCAgGUUUggCGCGGCCGUgcuGGCg -3'
miRNA:   3'- -UCUGCG---AGUaCAAG--GUGCCGGCG---CUG- -5'
6345 3' -56.7 NC_001847.1 + 85984 0.66 0.861918
Target:  5'- cGGCGCgugacCGUGgUCCGCGcGCCGaugGGCu -3'
miRNA:   3'- uCUGCGa----GUACaAGGUGC-CGGCg--CUG- -5'
6345 3' -56.7 NC_001847.1 + 86053 0.67 0.821243
Target:  5'- gAGGCGCUgG-GggCCACGGauGCGAg -3'
miRNA:   3'- -UCUGCGAgUaCaaGGUGCCggCGCUg -5'
6345 3' -56.7 NC_001847.1 + 86763 0.66 0.869452
Target:  5'- gAGGCccgGCcCGgcgGcgCCACGGUCGUGACg -3'
miRNA:   3'- -UCUG---CGaGUa--CaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 86836 0.68 0.770608
Target:  5'- cGAUGUUCGccuacgucaagcccaUGagCCACGGCCcCGACa -3'
miRNA:   3'- uCUGCGAGU---------------ACaaGGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 87278 0.72 0.525045
Target:  5'- cGGACGUgcgCGccgacGgcCCGCGGCCGCGGCc -3'
miRNA:   3'- -UCUGCGa--GUa----CaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 87684 0.72 0.525045
Target:  5'- cGGGCGCUgGggcugcugcgGcgCCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGAgUa---------CaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 88536 0.75 0.370602
Target:  5'- -cACGCUCGUGcgCCGCgaGGCCGCGcCg -3'
miRNA:   3'- ucUGCGAGUACaaGGUG--CCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 88654 0.67 0.803706
Target:  5'- -aACGCUCGg---CCAC-GCUGCGACg -3'
miRNA:   3'- ucUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 88868 0.68 0.728008
Target:  5'- aAGACGCg---GUgCgCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGaguaCAaG-GUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 89276 0.74 0.42161
Target:  5'- cGACGCU---GUUUCGCGcGCCGCGGCc -3'
miRNA:   3'- uCUGCGAguaCAAGGUGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 89687 0.66 0.846229
Target:  5'- uGGCGCgcgCuauUUgCGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGa--GuacAAgGUGC-CGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.