miRNA display CGI


Results 61 - 80 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 104331 0.67 0.803706
Target:  5'- cGcCGC-CGUGUuugCCGCGGCgGCaGACg -3'
miRNA:   3'- uCuGCGaGUACAa--GGUGCCGgCG-CUG- -5'
6345 3' -56.7 NC_001847.1 + 103902 0.7 0.657219
Target:  5'- -cACGC-CggGcgCCGCGGCCGCGGg -3'
miRNA:   3'- ucUGCGaGuaCaaGGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 103704 0.66 0.869452
Target:  5'- -cGCGC-CggGgccgCCGCGGCCGcCGGCc -3'
miRNA:   3'- ucUGCGaGuaCaa--GGUGCCGGC-GCUG- -5'
6345 3' -56.7 NC_001847.1 + 103688 0.66 0.838086
Target:  5'- cGACGCcCAUGgcgcCCACGaucaccagcGCCaGCGACg -3'
miRNA:   3'- uCUGCGaGUACaa--GGUGC---------CGG-CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 103397 0.67 0.785543
Target:  5'- cGGCGC-CggGUccuggcccUCCGCGGCCGCu-- -3'
miRNA:   3'- uCUGCGaGuaCA--------AGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 103227 0.7 0.657219
Target:  5'- -cGCGCgag----CCGCGGCCGCGGCc -3'
miRNA:   3'- ucUGCGaguacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 102918 0.66 0.834776
Target:  5'- cGACGCcgCGUGcgccuggacggcgUCCAaGGCCGCGGu -3'
miRNA:   3'- uCUGCGa-GUACa------------AGGUgCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 102813 0.67 0.794699
Target:  5'- cAGGCccGCgaucgCGUGUUCCAgCGGgucccguuCCGCGGCg -3'
miRNA:   3'- -UCUG--CGa----GUACAAGGU-GCC--------GGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 102655 0.67 0.785543
Target:  5'- uGACGCgCcgGga--GCGGCCGCGAg -3'
miRNA:   3'- uCUGCGaGuaCaaggUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 102535 0.73 0.448649
Target:  5'- cAGcCGCUcCGUGUcggCCgcgacgGCGGCCGCGACu -3'
miRNA:   3'- -UCuGCGA-GUACAa--GG------UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 102226 0.68 0.766823
Target:  5'- cGGccuCGCUCccG-UCCGCGGCCcCGGCu -3'
miRNA:   3'- -UCu--GCGAGuaCaAGGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 101243 0.66 0.861918
Target:  5'- cAGGCGgUCcUGcacgcCCGCGGCCacgcGCGGCg -3'
miRNA:   3'- -UCUGCgAGuACaa---GGUGCCGG----CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 100747 0.66 0.838086
Target:  5'- -aGCGCcgCGUcugCCGCGGCgGCGGCc -3'
miRNA:   3'- ucUGCGa-GUAcaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 100648 0.67 0.829755
Target:  5'- cGGCGC-CA-GggCCGCGcuGCUGCGGCg -3'
miRNA:   3'- uCUGCGaGUaCaaGGUGC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 100370 0.71 0.60586
Target:  5'- -cGCGCg------CCGCGGCCGCGGCg -3'
miRNA:   3'- ucUGCGaguacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 99686 0.67 0.785543
Target:  5'- -aGCGcCUCucgcgCCGCGGCCGCGuCg -3'
miRNA:   3'- ucUGC-GAGuacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 99445 0.67 0.829755
Target:  5'- cGGCGcCUCc---UCCACGGCCGCcaGCa -3'
miRNA:   3'- uCUGC-GAGuacaAGGUGCCGGCGc-UG- -5'
6345 3' -56.7 NC_001847.1 + 99183 0.7 0.657219
Target:  5'- uGGCGCccUCGUGgUCCucgcgcgagGCGGCCGCGcgGCg -3'
miRNA:   3'- uCUGCG--AGUACaAGG---------UGCCGGCGC--UG- -5'
6345 3' -56.7 NC_001847.1 + 98791 0.78 0.256266
Target:  5'- cGGCGCcgCGUGgcgcgCCGCGGCgCGCGGCa -3'
miRNA:   3'- uCUGCGa-GUACaa---GGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 98100 0.68 0.766823
Target:  5'- aAGGCGCcCAUGag-CGCGGCCaCGACc -3'
miRNA:   3'- -UCUGCGaGUACaagGUGCCGGcGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.