miRNA display CGI


Results 81 - 100 of 270 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 96958 0.7 0.667463
Target:  5'- cAGGCGCUCuucGUUCgcgggUACGGCCGCu-- -3'
miRNA:   3'- -UCUGCGAGua-CAAG-----GUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 96487 0.66 0.854175
Target:  5'- cGGCGggCGUcg-CCACGGCaaCGCGGCg -3'
miRNA:   3'- uCUGCgaGUAcaaGGUGCCG--GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 96374 0.7 0.626399
Target:  5'- gGGACGCUCGUGcUCCagcACGGgcCCGCcGCc -3'
miRNA:   3'- -UCUGCGAGUACaAGG---UGCC--GGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 94681 0.67 0.785543
Target:  5'- aGGACGCUUAUG--CC-CGuGCCGCG-Ca -3'
miRNA:   3'- -UCUGCGAGUACaaGGuGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 94015 0.68 0.73786
Target:  5'- cGACGC-CAUG-UCCGCGccuGCCGgGAUc -3'
miRNA:   3'- uCUGCGaGUACaAGGUGC---CGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 93920 0.74 0.439529
Target:  5'- gAGACGCUCGacUGcgugaUCACGGgCGCGACg -3'
miRNA:   3'- -UCUGCGAGU--ACaa---GGUGCCgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 93784 0.69 0.677678
Target:  5'- cGcCGCUUGgcugGUUCCgcGCGGCCGCG-Cg -3'
miRNA:   3'- uCuGCGAGUa---CAAGG--UGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 93618 0.67 0.803706
Target:  5'- cAGGUGCUCcgGccggCGCGGCCGCgGACg -3'
miRNA:   3'- -UCUGCGAGuaCaag-GUGCCGGCG-CUG- -5'
6345 3' -56.7 NC_001847.1 + 91598 0.7 0.616123
Target:  5'- cGGCGCUCGcGgcggcgcuucUCCucGCGGCUGCGGCu -3'
miRNA:   3'- uCUGCGAGUaCa---------AGG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 90260 0.69 0.718072
Target:  5'- uGACGCgcucGUUCaCGCGGCCuuugaGCGGCg -3'
miRNA:   3'- uCUGCGaguaCAAG-GUGCCGG-----CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 89687 0.66 0.846229
Target:  5'- uGGCGCgcgCuauUUgCGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGa--GuacAAgGUGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 89276 0.74 0.42161
Target:  5'- cGACGCU---GUUUCGCGcGCCGCGGCc -3'
miRNA:   3'- uCUGCGAguaCAAGGUGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 88868 0.68 0.728008
Target:  5'- aAGACGCg---GUgCgCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGaguaCAaG-GUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 88654 0.67 0.803706
Target:  5'- -aACGCUCGg---CCAC-GCUGCGACg -3'
miRNA:   3'- ucUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 88536 0.75 0.370602
Target:  5'- -cACGCUCGUGcgCCGCgaGGCCGCGcCg -3'
miRNA:   3'- ucUGCGAGUACaaGGUG--CCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 87684 0.72 0.525045
Target:  5'- cGGGCGCUgGggcugcugcgGcgCCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGAgUa---------CaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 87278 0.72 0.525045
Target:  5'- cGGACGUgcgCGccgacGgcCCGCGGCCGCGGCc -3'
miRNA:   3'- -UCUGCGa--GUa----CaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 86836 0.68 0.770608
Target:  5'- cGAUGUUCGccuacgucaagcccaUGagCCACGGCCcCGACa -3'
miRNA:   3'- uCUGCGAGU---------------ACaaGGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 86763 0.66 0.869452
Target:  5'- gAGGCccgGCcCGgcgGcgCCACGGUCGUGACg -3'
miRNA:   3'- -UCUG---CGaGUa--CaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 86053 0.67 0.821243
Target:  5'- gAGGCGCUgG-GggCCACGGauGCGAg -3'
miRNA:   3'- -UCUGCGAgUaCaaGGUGCCggCGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.