miRNA display CGI


Results 101 - 120 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 85984 0.66 0.861918
Target:  5'- cGGCGCgugacCGUGgUCCGCGcGCCGaugGGCu -3'
miRNA:   3'- uCUGCGa----GUACaAGGUGC-CGGCg--CUG- -5'
6345 3' -56.7 NC_001847.1 + 85647 0.66 0.854175
Target:  5'- cAGGCGCgcgUCAgGUUUggCGCGGCCGUgcuGGCg -3'
miRNA:   3'- -UCUGCG---AGUaCAAG--GUGCCGGCG---CUG- -5'
6345 3' -56.7 NC_001847.1 + 85430 0.67 0.794699
Target:  5'- cGGCGa--AUGaUUauaGCGGCCGCGACg -3'
miRNA:   3'- uCUGCgagUACaAGg--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 84974 0.68 0.775311
Target:  5'- -cACGCUCGUGc-UCAUGGCCGCcucgaucGACa -3'
miRNA:   3'- ucUGCGAGUACaaGGUGCCGGCG-------CUG- -5'
6345 3' -56.7 NC_001847.1 + 84224 0.68 0.74762
Target:  5'- --cCGCgagCAcGUuuUCCACGGCCGCG-Cg -3'
miRNA:   3'- ucuGCGa--GUaCA--AGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 83217 0.69 0.718072
Target:  5'- uGGGCccguGUUUGUGUUugacgCCGCGGCCGgGGCg -3'
miRNA:   3'- -UCUG----CGAGUACAA-----GGUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 83041 0.75 0.378806
Target:  5'- cGGcCGCUaGUGcgCUugGGCCGCGGCg -3'
miRNA:   3'- -UCuGCGAgUACaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 82885 0.73 0.448649
Target:  5'- cGGGCGCgccgCAgccaagCCGCGGCgCGCGGCg -3'
miRNA:   3'- -UCUGCGa---GUacaa--GGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 81777 0.69 0.677678
Target:  5'- -cGCGCUCGcgGUgcCCGCGGCCGCcaGCa -3'
miRNA:   3'- ucUGCGAGUa-CAa-GGUGCCGGCGc-UG- -5'
6345 3' -56.7 NC_001847.1 + 80484 0.66 0.854175
Target:  5'- -cGCGCUCcccGUUCCGCaGC-GCGGCg -3'
miRNA:   3'- ucUGCGAGua-CAAGGUGcCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 80150 0.66 0.861918
Target:  5'- -aGCGCg-GUGUUUgGCGGCUGCG-Cg -3'
miRNA:   3'- ucUGCGagUACAAGgUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 79185 0.66 0.838086
Target:  5'- cGGACGCggucgcgCggGUgcgcaUUCugGGCuCGCGACg -3'
miRNA:   3'- -UCUGCGa------GuaCA-----AGGugCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 78528 0.66 0.861918
Target:  5'- -cGCGCUCGa---CCGCGGCCuCGGCc -3'
miRNA:   3'- ucUGCGAGUacaaGGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 78334 0.67 0.812558
Target:  5'- cGGGCccgGCUUggGcgCCGCGGCgGCGAa -3'
miRNA:   3'- -UCUG---CGAGuaCaaGGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 77894 0.67 0.812558
Target:  5'- -cGCGCUC-UGcgCgGCGGCgGUGGCg -3'
miRNA:   3'- ucUGCGAGuACaaGgUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 77552 0.76 0.31664
Target:  5'- uGGCGCacccUCGUGcgcuUUCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUGCG----AGUAC----AAGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 77267 0.66 0.854175
Target:  5'- cGGGCGacaccCUCGUGg-CgACGGCgGCGACc -3'
miRNA:   3'- -UCUGC-----GAGUACaaGgUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 76469 0.72 0.515199
Target:  5'- cAGACGCgc---UUCCACGGCaGCGGCg -3'
miRNA:   3'- -UCUGCGaguacAAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 76400 0.7 0.626399
Target:  5'- gGGGCGC-CggGggCCGCGGCgGgGGCa -3'
miRNA:   3'- -UCUGCGaGuaCaaGGUGCCGgCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 75770 0.67 0.821243
Target:  5'- -cGCGCggGUGaa-CACGGCCGCGGg -3'
miRNA:   3'- ucUGCGagUACaagGUGCCGGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.