miRNA display CGI


Results 121 - 140 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 75701 0.7 0.636678
Target:  5'- gAGcCGCUCGgg--CCACgGGCCGCGGg -3'
miRNA:   3'- -UCuGCGAGUacaaGGUG-CCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 74386 0.67 0.803706
Target:  5'- gAGGCGCUgGgGgaCCgcGCGGCCGCcGCg -3'
miRNA:   3'- -UCUGCGAgUaCaaGG--UGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 74112 0.68 0.776248
Target:  5'- --cCGCUgCcgGUUCC-CGGCCGUGGu -3'
miRNA:   3'- ucuGCGA-GuaCAAGGuGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 73874 0.66 0.869452
Target:  5'- gGGGCGCgUCA-GUUCCGcCGGCgccccgcgcaGCGAUg -3'
miRNA:   3'- -UCUGCG-AGUaCAAGGU-GCCGg---------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73472 0.74 0.429619
Target:  5'- uGGGCGCaugucucgaaccuUCAUGgcggCCGCGGUgGCGGCg -3'
miRNA:   3'- -UCUGCG-------------AGUACaa--GGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73325 0.73 0.448649
Target:  5'- cGGACGCcgacgaccUCAUGUUcgaCCAUGGCCaggGCGACc -3'
miRNA:   3'- -UCUGCG--------AGUACAA---GGUGCCGG---CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73284 0.7 0.656193
Target:  5'- cGGGCGCUCGgcaggCGCGGCCuacgccgGCGACg -3'
miRNA:   3'- -UCUGCGAGUacaagGUGCCGG-------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73014 0.68 0.757277
Target:  5'- cGGGCGCg---GaaCCA-GGCCGCGGCa -3'
miRNA:   3'- -UCUGCGaguaCaaGGUgCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 72412 0.69 0.691914
Target:  5'- cGACGCggggacggCCACGGCCGCaACg -3'
miRNA:   3'- uCUGCGaguacaa-GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 71960 0.66 0.846229
Target:  5'- ---gGCUCGg---CCAUGGCgCGCGACc -3'
miRNA:   3'- ucugCGAGUacaaGGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 71559 0.68 0.728008
Target:  5'- gAGGCGgUCA---UCCACGGCaGCGAg -3'
miRNA:   3'- -UCUGCgAGUacaAGGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 71461 0.69 0.677678
Target:  5'- cGGGCGCUUccggGggCaugGCGGCCGCGAg -3'
miRNA:   3'- -UCUGCGAGua--CaaGg--UGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 70564 0.67 0.821243
Target:  5'- -cGCGCUCaAUGccCCGCGGCC-CGAg -3'
miRNA:   3'- ucUGCGAG-UACaaGGUGCCGGcGCUg -5'
6345 3' -56.7 NC_001847.1 + 70412 0.73 0.448649
Target:  5'- cGGAC-CUCGUGggcUgCACGGCCGCGuCg -3'
miRNA:   3'- -UCUGcGAGUACa--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 70011 0.7 0.671553
Target:  5'- gAGACGCUCAggaagCCGagccccaccgccagcCGaGCCGCGGCu -3'
miRNA:   3'- -UCUGCGAGUacaa-GGU---------------GC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 69933 0.69 0.695965
Target:  5'- aAGGCGguaaUCAUGcgcacguuggcgUCCGCGGgCGCGACc -3'
miRNA:   3'- -UCUGCg---AGUACa-----------AGGUGCCgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 69701 0.83 0.123361
Target:  5'- cGGCGCUCGg--UCCGCGGCgCGCGGCu -3'
miRNA:   3'- uCUGCGAGUacaAGGUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 69417 0.67 0.785543
Target:  5'- cGGCGC---UGUUCCuGCGGCucagCGCGGCg -3'
miRNA:   3'- uCUGCGaguACAAGG-UGCCG----GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 68765 0.68 0.776248
Target:  5'- cGACGCUgugGUaggcgagcUCCAUcGCCGCGGCg -3'
miRNA:   3'- uCUGCGAguaCA--------AGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 67443 0.7 0.667463
Target:  5'- cGGCGgUCAUcucgaggUCCagcgcgcgcgcgGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCgAGUAca-----AGG------------UGCCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.