miRNA display CGI


Results 141 - 160 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 67281 0.66 0.869452
Target:  5'- gAGGCGCgCggGgaCUuggUGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGaGuaCaaGGu--GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 66701 0.66 0.854175
Target:  5'- cGGGCGCggacc-UCUGCGGCCGCuucGACg -3'
miRNA:   3'- -UCUGCGaguacaAGGUGCCGGCG---CUG- -5'
6345 3' -56.7 NC_001847.1 + 65423 0.7 0.657219
Target:  5'- uGAUGCUCcgGgaggcggcagCCGCGcGCCGCGGa -3'
miRNA:   3'- uCUGCGAGuaCaa--------GGUGC-CGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 64830 0.66 0.838086
Target:  5'- cGGGCGCuUCAgc-UCCgagaccagcgcgGCGcGCCGCGACc -3'
miRNA:   3'- -UCUGCG-AGUacaAGG------------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 64686 0.66 0.838086
Target:  5'- gGGACaC-CAUGUUUuuccugccgcgCGCGGCCGuCGACa -3'
miRNA:   3'- -UCUGcGaGUACAAG-----------GUGCCGGC-GCUG- -5'
6345 3' -56.7 NC_001847.1 + 64434 0.66 0.838086
Target:  5'- cGGCGCgUCGUagUCgGCGGCCaCGGCc -3'
miRNA:   3'- uCUGCG-AGUAcaAGgUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 63992 0.69 0.708062
Target:  5'- cGGCGCUCAaGUgCCGCGaGCUcuacccggGCGGCg -3'
miRNA:   3'- uCUGCGAGUaCAaGGUGC-CGG--------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 63862 0.67 0.812558
Target:  5'- gGGGgGCgCAUGcgCgACGGCUGgGACg -3'
miRNA:   3'- -UCUgCGaGUACaaGgUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 63663 0.67 0.812558
Target:  5'- aAGAucUGCUCAUGc-UCGCGGCCGCc-- -3'
miRNA:   3'- -UCU--GCGAGUACaaGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 63579 0.66 0.854175
Target:  5'- uGACcCUCGUGUUCgACcgccaccccguGGCCGCGuGCc -3'
miRNA:   3'- uCUGcGAGUACAAGgUG-----------CCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 63357 0.66 0.869452
Target:  5'- gGGGCGCgugcggCAcugUGUacucgUCCACGaGCCGCcGCa -3'
miRNA:   3'- -UCUGCGa-----GU---ACA-----AGGUGC-CGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 62712 0.76 0.346727
Target:  5'- -aGCGUgcgCAUGUUCCgcguuGCGGCCGUGGCc -3'
miRNA:   3'- ucUGCGa--GUACAAGG-----UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 62144 0.66 0.854175
Target:  5'- cGGCGUgcgCAUGg-CCGCGGCgGCGu- -3'
miRNA:   3'- uCUGCGa--GUACaaGGUGCCGgCGCug -5'
6345 3' -56.7 NC_001847.1 + 62065 0.69 0.718072
Target:  5'- cGGAUGCgcgCGUcgacUUCCGCGcCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUAc---AAGGUGCcGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 61423 0.66 0.869452
Target:  5'- cGGCcCUCGacgcCCGCGGCCGCGcCg -3'
miRNA:   3'- uCUGcGAGUacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 60626 0.67 0.82722
Target:  5'- uGACGUUgaagacCAUGUUCagcacgagggugcgCGCGGCCGCGuCc -3'
miRNA:   3'- uCUGCGA------GUACAAG--------------GUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 59586 0.66 0.846229
Target:  5'- cGGCGCUCAcGggCagcuCGGCCGCcGAg -3'
miRNA:   3'- uCUGCGAGUaCaaGgu--GCCGGCG-CUg -5'
6345 3' -56.7 NC_001847.1 + 58272 0.68 0.728008
Target:  5'- cAGGC-CUcCAUGUgCU-CGGCCGCGGCg -3'
miRNA:   3'- -UCUGcGA-GUACAaGGuGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 58208 0.68 0.761109
Target:  5'- cAGGCGCUCcgGgcggaucugCCcgccgggcggcagcgGCGGCgCGCGACc -3'
miRNA:   3'- -UCUGCGAGuaCaa-------GG---------------UGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 57118 0.75 0.370602
Target:  5'- -cGCGCgCAUGUUgggggacgCCAUGGCCGUGACg -3'
miRNA:   3'- ucUGCGaGUACAA--------GGUGCCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.