miRNA display CGI


Results 101 - 120 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 88654 0.67 0.803706
Target:  5'- -aACGCUCGg---CCAC-GCUGCGACg -3'
miRNA:   3'- ucUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 63663 0.67 0.812558
Target:  5'- aAGAucUGCUCAUGc-UCGCGGCCGCc-- -3'
miRNA:   3'- -UCU--GCGAGUACaaGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 5467 0.67 0.821243
Target:  5'- cGGcCGCUC----UCUGCGGCgGCGGCa -3'
miRNA:   3'- -UCuGCGAGuacaAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 125316 0.67 0.829755
Target:  5'- cGugGCUCAUGgcggCgGCGGgCCG-GGCc -3'
miRNA:   3'- uCugCGAGUACaa--GgUGCC-GGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 132010 0.67 0.829755
Target:  5'- cGGCGCcgCcgGgcUCCcggugcucuCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGa-GuaCa-AGGu--------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 83217 0.69 0.718072
Target:  5'- uGGGCccguGUUUGUGUUugacgCCGCGGCCGgGGCg -3'
miRNA:   3'- -UCUG----CGAGUACAA-----GGUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 63992 0.69 0.708062
Target:  5'- cGGCGCUCAaGUgCCGCGaGCUcuacccggGCGGCg -3'
miRNA:   3'- uCUGCGAGUaCAaGGUGC-CGG--------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 134106 0.76 0.346727
Target:  5'- gAGACGCUCGUGcugCUGCGGCgCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUACaa-GGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 134047 0.74 0.412817
Target:  5'- cGGCGC-CGc---CCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 70412 0.73 0.448649
Target:  5'- cGGAC-CUCGUGggcUgCACGGCCGCGuCg -3'
miRNA:   3'- -UCUGcGAGUACa--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 131503 0.73 0.457874
Target:  5'- cGGCGCUgGUGgaCCugguguacGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGAgUACaaGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 5537 0.73 0.489967
Target:  5'- cGACGCUCGUGa-CgGCGGCCcagucgucgccguccGCGACg -3'
miRNA:   3'- uCUGCGAGUACaaGgUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 87278 0.72 0.525045
Target:  5'- cGGACGUgcgCGccgacGgcCCGCGGCCGCGGCc -3'
miRNA:   3'- -UCUGCGa--GUa----CaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 29231 0.71 0.563054
Target:  5'- cAGACGauccgccacugCAUGgccCCGCGGCCGCGcACg -3'
miRNA:   3'- -UCUGCga---------GUACaa-GGUGCCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 33484 0.7 0.616123
Target:  5'- cGAgGCg-AUG-UCCGCGGCgGCGGCg -3'
miRNA:   3'- uCUgCGagUACaAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 75701 0.7 0.636678
Target:  5'- gAGcCGCUCGgg--CCACgGGCCGCGGg -3'
miRNA:   3'- -UCuGCGAGUacaaGGUG-CCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 73284 0.7 0.656193
Target:  5'- cGGGCGCUCGgcaggCGCGGCCuacgccgGCGACg -3'
miRNA:   3'- -UCUGCGAGUacaagGUGCCGG-------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 96958 0.7 0.667463
Target:  5'- cAGGCGCUCuucGUUCgcgggUACGGCCGCu-- -3'
miRNA:   3'- -UCUGCGAGua-CAAG-----GUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 93784 0.69 0.677678
Target:  5'- cGcCGCUUGgcugGUUCCgcGCGGCCGCG-Cg -3'
miRNA:   3'- uCuGCGAGUa---CAAGG--UGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 134233 0.69 0.697986
Target:  5'- cGGCGC-CGgcgGgcggcggCCgGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUa--Caa-----GG-UGCCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.