miRNA display CGI


Results 121 - 140 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 74386 0.67 0.803706
Target:  5'- gAGGCGCUgGgGgaCCgcGCGGCCGCcGCg -3'
miRNA:   3'- -UCUGCGAgUaCaaGG--UGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 62065 0.69 0.718072
Target:  5'- cGGAUGCgcgCGUcgacUUCCGCGcCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUAc---AAGGUGCcGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 20449 0.69 0.718072
Target:  5'- cGGCGCggaagGcgUCCAgcaGGCCGCGGCg -3'
miRNA:   3'- uCUGCGagua-Ca-AGGUg--CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 18229 0.69 0.706051
Target:  5'- cGGCGgUCGUGcgcgcggguggaUCCAagaUGGCCGCGACc -3'
miRNA:   3'- uCUGCgAGUACa-----------AGGU---GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 72412 0.69 0.691914
Target:  5'- cGACGCggggacggCCACGGCCGCaACg -3'
miRNA:   3'- uCUGCGaguacaa-GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 21720 0.69 0.677678
Target:  5'- uGGACGCggCGccguUGUUCCccccgacgcuacGCuGCCGCGACg -3'
miRNA:   3'- -UCUGCGa-GU----ACAAGG------------UGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 103902 0.7 0.657219
Target:  5'- -cACGC-CggGcgCCGCGGCCGCGGg -3'
miRNA:   3'- ucUGCGaGuaCaaGGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 52937 0.7 0.646955
Target:  5'- uGGCGCg---GUUCgACcgaGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaguaCAAGgUG---CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130775 0.7 0.636678
Target:  5'- -cGCGCUCgcggucgcgGUGgaggcggCCGCGGCCGgGGCg -3'
miRNA:   3'- ucUGCGAG---------UACaa-----GGUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 22865 0.68 0.73786
Target:  5'- cGACGCggcCGUGUg-CACGGCuucguCGCGGCu -3'
miRNA:   3'- uCUGCGa--GUACAagGUGCCG-----GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 112649 0.68 0.751496
Target:  5'- cGcCGC-CAUGagCCACGGCCagccuugccccaccuGCGACg -3'
miRNA:   3'- uCuGCGaGUACaaGGUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 102226 0.68 0.766823
Target:  5'- cGGccuCGCUCccG-UCCGCGGCCcCGGCu -3'
miRNA:   3'- -UCu--GCGAGuaCaAGGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 56786 0.68 0.776248
Target:  5'- cGGcACGCUCGaggGgcugUUCGCcGCCGCGGCg -3'
miRNA:   3'- -UC-UGCGAGUa--Ca---AGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 85430 0.67 0.794699
Target:  5'- cGGCGa--AUGaUUauaGCGGCCGCGACg -3'
miRNA:   3'- uCUGCgagUACaAGg--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 69417 0.67 0.785543
Target:  5'- cGGCGC---UGUUCCuGCGGCucagCGCGGCg -3'
miRNA:   3'- uCUGCGaguACAAGG-UGCCG----GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 8999 0.67 0.785543
Target:  5'- -cGCGCUguuugcCAUcgUgCGCGGCCGCGACc -3'
miRNA:   3'- ucUGCGA------GUAcaAgGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 62712 0.76 0.346727
Target:  5'- -aGCGUgcgCAUGUUCCgcguuGCGGCCGUGGCc -3'
miRNA:   3'- ucUGCGa--GUACAAGG-----UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 31293 0.76 0.346727
Target:  5'- gAGACGCUCGUGcugCUGCGGCgCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUACaa-GGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 27341 0.68 0.776248
Target:  5'- -cGCGCUUug---CCGCGGCCGCcGCa -3'
miRNA:   3'- ucUGCGAGuacaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 13921 0.77 0.281857
Target:  5'- gGGGCGCUCG-GUgCCGC-GCCGCGGCa -3'
miRNA:   3'- -UCUGCGAGUaCAaGGUGcCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.