miRNA display CGI


Results 141 - 160 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 27341 0.68 0.776248
Target:  5'- -cGCGCUUug---CCGCGGCCGCcGCa -3'
miRNA:   3'- ucUGCGAGuacaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 120102 0.73 0.456021
Target:  5'- uGGCGCUCGcacagcucgCCcgGCGGCCGCGGCu -3'
miRNA:   3'- uCUGCGAGUacaa-----GG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 28690 0.73 0.457874
Target:  5'- cGGCGCUgGUGgaCCugguguacGCGcGCCGCGACg -3'
miRNA:   3'- uCUGCGAgUACaaGG--------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 38963 0.73 0.47662
Target:  5'- -aGCGC-CAUGg-CgGCGGCCGCGGCg -3'
miRNA:   3'- ucUGCGaGUACaaGgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 40897 0.66 0.860386
Target:  5'- aGGGCGCgagccgcUCCACGGCcCGCG-Cg -3'
miRNA:   3'- -UCUGCGaguaca-AGGUGCCG-GCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 94681 0.67 0.785543
Target:  5'- aGGACGCUUAUG--CC-CGuGCCGCG-Ca -3'
miRNA:   3'- -UCUGCGAGUACaaGGuGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 985 0.66 0.846229
Target:  5'- cGGgGCUUccg--CCGCGGCgGCGGCa -3'
miRNA:   3'- uCUgCGAGuacaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 41341 0.66 0.846229
Target:  5'- cGGgGaCUCGgccgCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUgC-GAGUacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 52245 0.68 0.776248
Target:  5'- cGGGCGC-CGcGcgCCGCGGCUuggcuGCGGCg -3'
miRNA:   3'- -UCUGCGaGUaCaaGGUGCCGG-----CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 13921 0.77 0.281857
Target:  5'- gGGGCGCUCG-GUgCCGC-GCCGCGGCa -3'
miRNA:   3'- -UCUGCGAGUaCAaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 31293 0.76 0.346727
Target:  5'- gAGACGCUCGUGcugCUGCGGCgCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUACaa-GGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 62712 0.76 0.346727
Target:  5'- -aGCGUgcgCAUGUUCCgcguuGCGGCCGUGGCc -3'
miRNA:   3'- ucUGCGa--GUACAAGG-----UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 2543 0.68 0.776248
Target:  5'- cGGCGCUCccg--CCGCcgGGCCGgGGCg -3'
miRNA:   3'- uCUGCGAGuacaaGGUG--CCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 88536 0.75 0.370602
Target:  5'- -cACGCUCGUGcgCCGCgaGGCCGCGcCg -3'
miRNA:   3'- ucUGCGAGUACaaGGUG--CCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 31234 0.74 0.412817
Target:  5'- cGGCGC-CGc---CCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 2242 0.74 0.42161
Target:  5'- uGGGCGCgggCGUGUgguagUCCccggGCGGCaCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUACA-----AGG----UGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 102535 0.73 0.448649
Target:  5'- cAGcCGCUcCGUGUcggCCgcgacgGCGGCCGCGACu -3'
miRNA:   3'- -UCuGCGA-GUACAa--GG------UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 30261 0.73 0.47662
Target:  5'- gGGGCGCUCGccg-CCACcGCUGCGGCg -3'
miRNA:   3'- -UCUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 99686 0.67 0.785543
Target:  5'- -aGCGcCUCucgcgCCGCGGCCGCGuCg -3'
miRNA:   3'- ucUGC-GAGuacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 584 0.67 0.785543
Target:  5'- cGGCGC-CggGUccuggcccUCCGCGGCCGCu-- -3'
miRNA:   3'- uCUGCGaGuaCA--------AGGUGCCGGCGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.