miRNA display CGI


Results 101 - 120 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 47847 0.67 0.794699
Target:  5'- -cGCGCaaaUCGg---CCGCGGCCGCGGg -3'
miRNA:   3'- ucUGCG---AGUacaaGGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 102813 0.67 0.794699
Target:  5'- cAGGCccGCgaucgCGUGUUCCAgCGGgucccguuCCGCGGCg -3'
miRNA:   3'- -UCUG--CGa----GUACAAGGU-GCC--------GGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 99686 0.67 0.785543
Target:  5'- -aGCGcCUCucgcgCCGCGGCCGCGuCg -3'
miRNA:   3'- ucUGC-GAGuacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 584 0.67 0.785543
Target:  5'- cGGCGC-CggGUccuggcccUCCGCGGCCGCu-- -3'
miRNA:   3'- uCUGCGaGuaCA--------AGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 94681 0.67 0.785543
Target:  5'- aGGACGCUUAUG--CC-CGuGCCGCG-Ca -3'
miRNA:   3'- -UCUGCGAGUACaaGGuGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 60626 0.67 0.82722
Target:  5'- uGACGUUgaagacCAUGUUCagcacgagggugcgCGCGGCCGCGuCc -3'
miRNA:   3'- uCUGCGA------GUACAAG--------------GUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 22503 0.67 0.829755
Target:  5'- cGugGCUCAUGgcggCgGCGGgCCG-GGCc -3'
miRNA:   3'- uCugCGAGUACaa--GgUGCC-GGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 64434 0.66 0.838086
Target:  5'- cGGCGCgUCGUagUCgGCGGCCaCGGCc -3'
miRNA:   3'- uCUGCG-AGUAcaAGgUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 14641 0.66 0.838086
Target:  5'- cGGCGCUCGcGcgCCGCucGCUGCGAg -3'
miRNA:   3'- uCUGCGAGUaCaaGGUGc-CGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 130506 0.66 0.838086
Target:  5'- cGGugGCUCcUGcccUUCUACGuggucccagagcGCUGCGACg -3'
miRNA:   3'- -UCugCGAGuAC---AAGGUGC------------CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 119201 0.66 0.838086
Target:  5'- uGGCgaGCUCGUcGgcgCCGCGGCCaccgcgggGCGGCg -3'
miRNA:   3'- uCUG--CGAGUA-Caa-GGUGCCGG--------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 64830 0.66 0.838086
Target:  5'- cGGGCGCuUCAgc-UCCgagaccagcgcgGCGcGCCGCGACc -3'
miRNA:   3'- -UCUGCG-AGUacaAGG------------UGC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 52084 0.66 0.838086
Target:  5'- -uGCGCUCuucggCCGC-GCCGCGGCc -3'
miRNA:   3'- ucUGCGAGuacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 103688 0.66 0.838086
Target:  5'- cGACGCcCAUGgcgcCCACGaucaccagcGCCaGCGACg -3'
miRNA:   3'- uCUGCGaGUACaa--GGUGC---------CGG-CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 102918 0.66 0.834776
Target:  5'- cGACGCcgCGUGcgccuggacggcgUCCAaGGCCGCGGu -3'
miRNA:   3'- uCUGCGa-GUACa------------AGGUgCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 106680 0.67 0.829755
Target:  5'- cGGCGCgUCGUG--CCACGGCgGCcauaGGCa -3'
miRNA:   3'- uCUGCG-AGUACaaGGUGCCGgCG----CUG- -5'
6345 3' -56.7 NC_001847.1 + 29197 0.67 0.829755
Target:  5'- cGGCGCcgCcgGgcUCCcggugcucuCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGa-GuaCa-AGGu--------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 99445 0.67 0.829755
Target:  5'- cGGCGcCUCc---UCCACGGCCGCcaGCa -3'
miRNA:   3'- uCUGC-GAGuacaAGGUGCCGGCGc-UG- -5'
6345 3' -56.7 NC_001847.1 + 51899 0.67 0.829755
Target:  5'- -cGCGCUUucgGccgCCGCcccGGCCGCGGCg -3'
miRNA:   3'- ucUGCGAGua-Caa-GGUG---CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 44900 0.67 0.829755
Target:  5'- -aGCGCgUCAcag-CCGCGGCgGCGGCc -3'
miRNA:   3'- ucUGCG-AGUacaaGGUGCCGgCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.