miRNA display CGI


Results 121 - 140 of 270 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 52084 0.66 0.838086
Target:  5'- -uGCGCUCuucggCCGC-GCCGCGGCc -3'
miRNA:   3'- ucUGCGAGuacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 103688 0.66 0.838086
Target:  5'- cGACGCcCAUGgcgcCCACGaucaccagcGCCaGCGACg -3'
miRNA:   3'- uCUGCGaGUACaa--GGUGC---------CGG-CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 102918 0.66 0.834776
Target:  5'- cGACGCcgCGUGcgccuggacggcgUCCAaGGCCGCGGu -3'
miRNA:   3'- uCUGCGa-GUACa------------AGGUgCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 106680 0.67 0.829755
Target:  5'- cGGCGCgUCGUG--CCACGGCgGCcauaGGCa -3'
miRNA:   3'- uCUGCG-AGUACaaGGUGCCGgCG----CUG- -5'
6345 3' -56.7 NC_001847.1 + 29197 0.67 0.829755
Target:  5'- cGGCGCcgCcgGgcUCCcggugcucuCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGa-GuaCa-AGGu--------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 99445 0.67 0.829755
Target:  5'- cGGCGcCUCc---UCCACGGCCGCcaGCa -3'
miRNA:   3'- uCUGC-GAGuacaAGGUGCCGGCGc-UG- -5'
6345 3' -56.7 NC_001847.1 + 51899 0.67 0.829755
Target:  5'- -cGCGCUUucgGccgCCGCcccGGCCGCGGCg -3'
miRNA:   3'- ucUGCGAGua-Caa-GGUG---CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 44900 0.67 0.829755
Target:  5'- -aGCGCgUCAcag-CCGCGGCgGCGGCc -3'
miRNA:   3'- ucUGCG-AGUacaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 105351 0.67 0.815181
Target:  5'- gGGGCGCUCGcg-UCCAcaaacggccagagccCGGCCGCcagggccGACa -3'
miRNA:   3'- -UCUGCGAGUacaAGGU---------------GCCGGCG-------CUG- -5'
6345 3' -56.7 NC_001847.1 + 128619 0.67 0.820382
Target:  5'- -cGCGCUucuaCGUGUUCCaggcugaGCGcGCCgGCGACg -3'
miRNA:   3'- ucUGCGA----GUACAAGG-------UGC-CGG-CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 70564 0.67 0.821243
Target:  5'- -cGCGCUCaAUGccCCGCGGCC-CGAg -3'
miRNA:   3'- ucUGCGAG-UACaaGGUGCCGGcGCUg -5'
6345 3' -56.7 NC_001847.1 + 47206 0.67 0.821243
Target:  5'- -cACGCUCAccgcgUgCGCGGCCGCGcCc -3'
miRNA:   3'- ucUGCGAGUaca--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 60626 0.67 0.82722
Target:  5'- uGACGUUgaagacCAUGUUCagcacgagggugcgCGCGGCCGCGuCc -3'
miRNA:   3'- uCUGCGA------GUACAAG--------------GUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 22503 0.67 0.829755
Target:  5'- cGugGCUCAUGgcggCgGCGGgCCG-GGCc -3'
miRNA:   3'- uCugCGAGUACaa--GgUGCC-GGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 134106 0.76 0.346727
Target:  5'- gAGACGCUCGUGcugCUGCGGCgCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUACaa-GGUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 77552 0.76 0.31664
Target:  5'- uGGCGCacccUCGUGcgcuUUCCGCGGCCGCG-Cg -3'
miRNA:   3'- uCUGCG----AGUAC----AAGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 34766 0.76 0.31664
Target:  5'- uGGCGCggcUGcgcgCCGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaguACaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130744 0.78 0.26248
Target:  5'- aGGACGCggaCA-GcgCCugGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUaCaaGGugCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 51379 0.82 0.140499
Target:  5'- uGACGCUCGcGgaggCCGCGGUCGCGGCg -3'
miRNA:   3'- uCUGCGAGUaCaa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 104985 0.66 0.869452
Target:  5'- gGGAagaGCggGUGgUCCGCGaGCCGCGcCg -3'
miRNA:   3'- -UCUg--CGagUACaAGGUGC-CGGCGCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.