miRNA display CGI


Results 1 - 20 of 273 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 135129 0.68 0.63406
Target:  5'- -----cGGGGUcgcaggGgGCCCGCGCGgCGCg -3'
miRNA:   3'- uacaaaCUCCA------CgCGGGCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 134854 0.66 0.764054
Target:  5'- -----cGGGGacgGCGCCCGCGCGggcuCgGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGGCGUGC----GgCG- -5'
6345 5' -58.2 NC_001847.1 + 134519 0.75 0.301296
Target:  5'- -gGgcgGGGGgagGCGCgggCCGCGCGCCGCu -3'
miRNA:   3'- uaCaaaCUCCa--CGCG---GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 133910 0.67 0.695239
Target:  5'- aAUGUaUGucccacacGG-GCGCCCGCGCGCUa- -3'
miRNA:   3'- -UACAaACu-------CCaCGCGGGCGUGCGGcg -5'
6345 5' -58.2 NC_001847.1 + 133205 0.67 0.744841
Target:  5'- -----gGAGGagcucUGCG-CCGCGCGCCGg -3'
miRNA:   3'- uacaaaCUCC-----ACGCgGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 133173 0.67 0.705302
Target:  5'- -----cGGGGagGCGCUgGCGgCGCCGCc -3'
miRNA:   3'- uacaaaCUCCa-CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 133029 0.67 0.70229
Target:  5'- -----cGAGGcGCuggccgagaucgcgGCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCG--------------CGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 132947 1.08 0.001564
Target:  5'- cAUGUUUGAGGUGCGCCCGCACGCCGCc -3'
miRNA:   3'- -UACAAACUCCACGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 132382 0.71 0.474637
Target:  5'- -----cGGGGgcgccgGCGCCgGCGcCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 131989 0.69 0.62381
Target:  5'- -----gGAGGcG-GCCCGcCGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCgCGGGC-GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 131818 0.68 0.663748
Target:  5'- -----gGAGGccgGCGCCgGCggcagcggcgcccGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGgCG-------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 131321 0.66 0.754502
Target:  5'- -----cGAGGcGUgGCCCggcaGCGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCG-CGGG----CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 131234 0.66 0.754502
Target:  5'- ----cUGuGcGUGCGUCCGCGCcaCCGCg -3'
miRNA:   3'- uacaaACuC-CACGCGGGCGUGc-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 130505 0.69 0.572803
Target:  5'- -gGgcUGAGGcgcgcgaGCGCCgGCGgGCCGCc -3'
miRNA:   3'- uaCaaACUCCa------CGCGGgCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 129660 0.67 0.735082
Target:  5'- -----cGAGGUugcgGCGgCCGCugcCGCCGCc -3'
miRNA:   3'- uacaaaCUCCA----CGCgGGCGu--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 129447 0.69 0.62381
Target:  5'- gGUGUccaagcggcuacUUGAGcugGCGgCCGC-CGCCGCg -3'
miRNA:   3'- -UACA------------AACUCca-CGCgGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 128629 0.7 0.532709
Target:  5'- cGUGUUccaggcUGAGc-GCGCCgGCgACGCCGCu -3'
miRNA:   3'- -UACAA------ACUCcaCGCGGgCG-UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 127030 0.72 0.437732
Target:  5'- ----cUGGGGccccGCGCCUGCgcugGCGCCGCg -3'
miRNA:   3'- uacaaACUCCa---CGCGGGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 124329 0.71 0.455983
Target:  5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 124273 0.72 0.41116
Target:  5'- -gGUcUGccuGG-GCGCCCGCGCccGCCGCg -3'
miRNA:   3'- uaCAaACu--CCaCGCGGGCGUG--CGGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.