Results 1 - 20 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 135129 | 0.68 | 0.63406 |
Target: 5'- -----cGGGGUcgcaggGgGCCCGCGCGgCGCg -3' miRNA: 3'- uacaaaCUCCA------CgCGGGCGUGCgGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 134854 | 0.66 | 0.764054 |
Target: 5'- -----cGGGGacgGCGCCCGCGCGggcuCgGCg -3' miRNA: 3'- uacaaaCUCCa--CGCGGGCGUGC----GgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 134519 | 0.75 | 0.301296 |
Target: 5'- -gGgcgGGGGgagGCGCgggCCGCGCGCCGCu -3' miRNA: 3'- uaCaaaCUCCa--CGCG---GGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 133910 | 0.67 | 0.695239 |
Target: 5'- aAUGUaUGucccacacGG-GCGCCCGCGCGCUa- -3' miRNA: 3'- -UACAaACu-------CCaCGCGGGCGUGCGGcg -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 133205 | 0.67 | 0.744841 |
Target: 5'- -----gGAGGagcucUGCG-CCGCGCGCCGg -3' miRNA: 3'- uacaaaCUCC-----ACGCgGGCGUGCGGCg -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 133173 | 0.67 | 0.705302 |
Target: 5'- -----cGGGGagGCGCUgGCGgCGCCGCc -3' miRNA: 3'- uacaaaCUCCa-CGCGGgCGU-GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 133029 | 0.67 | 0.70229 |
Target: 5'- -----cGAGGcGCuggccgagaucgcgGCCCGC-CGCCGCg -3' miRNA: 3'- uacaaaCUCCaCG--------------CGGGCGuGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 132947 | 1.08 | 0.001564 |
Target: 5'- cAUGUUUGAGGUGCGCCCGCACGCCGCc -3' miRNA: 3'- -UACAAACUCCACGCGGGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 132382 | 0.71 | 0.474637 |
Target: 5'- -----cGGGGgcgccgGCGCCgGCGcCGCCGCg -3' miRNA: 3'- uacaaaCUCCa-----CGCGGgCGU-GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 131989 | 0.69 | 0.62381 |
Target: 5'- -----gGAGGcG-GCCCGcCGCGCCGCc -3' miRNA: 3'- uacaaaCUCCaCgCGGGC-GUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 131818 | 0.68 | 0.663748 |
Target: 5'- -----gGAGGccgGCGCCgGCggcagcggcgcccGCGCCGCg -3' miRNA: 3'- uacaaaCUCCa--CGCGGgCG-------------UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 131321 | 0.66 | 0.754502 |
Target: 5'- -----cGAGGcGUgGCCCggcaGCGCGCCGCc -3' miRNA: 3'- uacaaaCUCCaCG-CGGG----CGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 131234 | 0.66 | 0.754502 |
Target: 5'- ----cUGuGcGUGCGUCCGCGCcaCCGCg -3' miRNA: 3'- uacaaACuC-CACGCGGGCGUGc-GGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 130505 | 0.69 | 0.572803 |
Target: 5'- -gGgcUGAGGcgcgcgaGCGCCgGCGgGCCGCc -3' miRNA: 3'- uaCaaACUCCa------CGCGGgCGUgCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 129660 | 0.67 | 0.735082 |
Target: 5'- -----cGAGGUugcgGCGgCCGCugcCGCCGCc -3' miRNA: 3'- uacaaaCUCCA----CGCgGGCGu--GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 129447 | 0.69 | 0.62381 |
Target: 5'- gGUGUccaagcggcuacUUGAGcugGCGgCCGC-CGCCGCg -3' miRNA: 3'- -UACA------------AACUCca-CGCgGGCGuGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 128629 | 0.7 | 0.532709 |
Target: 5'- cGUGUUccaggcUGAGc-GCGCCgGCgACGCCGCu -3' miRNA: 3'- -UACAA------ACUCcaCGCGGgCG-UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 127030 | 0.72 | 0.437732 |
Target: 5'- ----cUGGGGccccGCGCCUGCgcugGCGCCGCg -3' miRNA: 3'- uacaaACUCCa---CGCGGGCG----UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 124329 | 0.71 | 0.455983 |
Target: 5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3' miRNA: 3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 124273 | 0.72 | 0.41116 |
Target: 5'- -gGUcUGccuGG-GCGCCCGCGCccGCCGCg -3' miRNA: 3'- uaCAaACu--CCaCGCGGGCGUG--CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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