miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 60720 0.68 0.674964
Target:  5'- ---gUUGuGGUacauuacgucgGCgGCCCGCGCGCgCGCg -3'
miRNA:   3'- uacaAACuCCA-----------CG-CGGGCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 6313 0.68 0.668851
Target:  5'- --uUUUGGuGGUuggcccuuuuugugcGCGCCUGCGCGcCCGCc -3'
miRNA:   3'- uacAAACU-CCA---------------CGCGGGCGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 63219 0.68 0.664769
Target:  5'- -cGUUUacGcGUGCGCgcgCCGCGCGCCGg -3'
miRNA:   3'- uaCAAAcuC-CACGCG---GGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 57604 0.68 0.664769
Target:  5'- -----cGAgGGUGCGCCaCGCccucGCGCuCGCa -3'
miRNA:   3'- uacaaaCU-CCACGCGG-GCG----UGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 58737 0.68 0.664769
Target:  5'- -----cGGGGUGCcCCCGC-CGCgGCc -3'
miRNA:   3'- uacaaaCUCCACGcGGGCGuGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 29005 0.68 0.663748
Target:  5'- -----gGAGGccgGCGCCgGCggcagcggcgcccGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGgCG-------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 105599 0.68 0.654548
Target:  5'- -cGUgcGGGGgaacucgaGCGCCCGC--GCCGCg -3'
miRNA:   3'- uaCAaaCUCCa-------CGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32316 0.68 0.63406
Target:  5'- -----cGGGGUcgcaggGgGCCCGCGCGgCGCg -3'
miRNA:   3'- uacaaaCUCCA------CgCGGGCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 60928 0.68 0.633035
Target:  5'- -cGUUgcaGAGGUcaaagGgGCCCGUguuuugcaggaagGCGCCGCg -3'
miRNA:   3'- uaCAAa--CUCCA-----CgCGGGCG-------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 80155 0.69 0.62381
Target:  5'- gGUGUUUGGcGGcUGCGCgaaguugUGCGCGCUGCc -3'
miRNA:   3'- -UACAAACU-CC-ACGCGg------GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 129447 0.69 0.62381
Target:  5'- gGUGUccaagcggcuacUUGAGcugGCGgCCGC-CGCCGCg -3'
miRNA:   3'- -UACA------------AACUCca-CGCgGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 45152 0.69 0.62381
Target:  5'- -----cGGGGUGCaGCCC-CGCGgCGCg -3'
miRNA:   3'- uacaaaCUCCACG-CGGGcGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 29176 0.69 0.62381
Target:  5'- -----gGAGGcG-GCCCGcCGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCgCGGGC-GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 91885 0.69 0.62381
Target:  5'- -----aGcAGGUGCccCCCGgGCGCCGCg -3'
miRNA:   3'- uacaaaC-UCCACGc-GGGCgUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 13914 0.69 0.613566
Target:  5'- gGUGgcUG-GG-GCGCUCGgugcCGCGCCGCg -3'
miRNA:   3'- -UACaaACuCCaCGCGGGC----GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 52644 0.69 0.613566
Target:  5'- -cGUUgccGAuGGc-CGCCCGCACGgCCGCg -3'
miRNA:   3'- uaCAAa--CU-CCacGCGGGCGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 40975 0.69 0.613566
Target:  5'- -----cGAGGcggccGCGCCCaGCAgcCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCGGG-CGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 38095 0.69 0.613566
Target:  5'- -----cGGGGaaaGCaGCCCGgACGCCGCu -3'
miRNA:   3'- uacaaaCUCCa--CG-CGGGCgUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 12558 0.69 0.613566
Target:  5'- -----cGcAGGUGCGCaaCGgGCGCCGCg -3'
miRNA:   3'- uacaaaC-UCCACGCGg-GCgUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 58890 0.69 0.603335
Target:  5'- -cGUUggcGAGGUGCGCCUcCAUGgCGUc -3'
miRNA:   3'- uaCAAa--CUCCACGCGGGcGUGCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.