miRNA display CGI


Results 101 - 120 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 34761 0.67 0.715303
Target:  5'- -----cGAGcugGCGCggCUGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCca-CGCG--GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 133173 0.67 0.705302
Target:  5'- -----cGGGGagGCGCUgGCGgCGCCGCc -3'
miRNA:   3'- uacaaaCUCCa-CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 122919 0.67 0.695239
Target:  5'- -cGUUcG-GGUGUGC--GCGCGCCGCg -3'
miRNA:   3'- uaCAAaCuCCACGCGggCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 74392 0.67 0.715303
Target:  5'- ----cUGGGGgaccGCGCggccgCCGCGCGCgCGCg -3'
miRNA:   3'- uacaaACUCCa---CGCG-----GGCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 38719 0.67 0.735082
Target:  5'- -----cGGGGccGCGCCUGC-CGCCGg -3'
miRNA:   3'- uacaaaCUCCa-CGCGGGCGuGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 3339 0.67 0.732136
Target:  5'- -----aGGGGUGCguuaugccgacgcuGCCgGC-CGCCGCa -3'
miRNA:   3'- uacaaaCUCCACG--------------CGGgCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 46774 0.67 0.715303
Target:  5'- -----cGGGGccgguccgccGCGCCCGCGCGCCc- -3'
miRNA:   3'- uacaaaCUCCa---------CGCGGGCGUGCGGcg -5'
6345 5' -58.2 NC_001847.1 + 77019 0.67 0.695239
Target:  5'- -----gGAGGUccugGCGCucauCCGcCGCGCCGCa -3'
miRNA:   3'- uacaaaCUCCA----CGCG----GGC-GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 119112 0.68 0.654548
Target:  5'- ------cGGGUGCGCCCGgC-CGCUGUa -3'
miRNA:   3'- uacaaacUCCACGCGGGC-GuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 60465 0.67 0.744841
Target:  5'- -cGUc--GGGcGCGUCCGCcaugGCGCCGCc -3'
miRNA:   3'- uaCAaacUCCaCGCGGGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 120097 0.67 0.735082
Target:  5'- -cGg--GAGauaaaGCGCCCGCGCGUCGg -3'
miRNA:   3'- uaCaaaCUCca---CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 28983 0.66 0.754502
Target:  5'- -----cGGGaacGUGCGCCaugcuagaGCGCGCCGUg -3'
miRNA:   3'- uacaaaCUC---CACGCGGg-------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 24760 0.66 0.764054
Target:  5'- -cGgcUGAGGUGCGa-CGCGCgGUCGUc -3'
miRNA:   3'- uaCaaACUCCACGCggGCGUG-CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 51372 0.66 0.764054
Target:  5'- ----gUGAcGGUGaCGCUCGCGgagGCCGCg -3'
miRNA:   3'- uacaaACU-CCAC-GCGGGCGUg--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 33688 0.66 0.754502
Target:  5'- -----aGAGGcgcagGCGCUCGCGgCGCgGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCGGGCGU-GCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 59498 0.67 0.735082
Target:  5'- -cGgcagGGGGUGCGCcgaggCCGCaccggcuugguGCGCUGCg -3'
miRNA:   3'- uaCaaa-CUCCACGCG-----GGCG-----------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 44444 0.66 0.764054
Target:  5'- -----cGGGGgcgcgGCGCgCgGCACGCgCGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCG-GgCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 24918 0.66 0.764054
Target:  5'- cAUGUUU-AGcacgGCCCGCACGUCGCa -3'
miRNA:   3'- -UACAAAcUCcacgCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 53240 0.67 0.735082
Target:  5'- -------uGGUGCGCUgGCugcgGCGCCGCc -3'
miRNA:   3'- uacaaacuCCACGCGGgCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 23526 0.68 0.654548
Target:  5'- -----cGAGGUcGcCGCCCGUgaagACGCCGUu -3'
miRNA:   3'- uacaaaCUCCA-C-GCGGGCG----UGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.