Results 1 - 20 of 521 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6346 | 3' | -60.6 | NC_001847.1 | + | 132763 | 1.11 | 0.000792 |
Target: 5'- gCGUCACCGCCGUCUUCGCGGGCGCGCg -3' miRNA: 3'- -GCAGUGGCGGCAGAAGCGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 80528 | 0.83 | 0.080626 |
Target: 5'- uGUCGgCGCaCGUCggcaucggCGCGGGCGCGCg -3' miRNA: 3'- gCAGUgGCG-GCAGaa------GCGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 56301 | 0.81 | 0.098927 |
Target: 5'- aGUCugCGgCGUCgcgCgGCGGGCGCGCg -3' miRNA: 3'- gCAGugGCgGCAGaa-G-CGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 108344 | 0.81 | 0.101474 |
Target: 5'- gCGUCACgGCCGUCgucugcggcgCGCaggaGGGCGCGCg -3' miRNA: 3'- -GCAGUGgCGGCAGaa--------GCG----CCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 38134 | 0.8 | 0.124179 |
Target: 5'- cCGggCACCGa-GUCUUCGCGcGGCGCGCc -3' miRNA: 3'- -GCa-GUGGCggCAGAAGCGC-CCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 4401 | 0.79 | 0.133184 |
Target: 5'- gGUCGCCGCCGUCgacgccgacgGCGGcgaGCGCGCg -3' miRNA: 3'- gCAGUGGCGGCAGaag-------CGCC---CGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 85564 | 0.79 | 0.140678 |
Target: 5'- uGUCcucgGCCGUCGUCUcaacggcgccgUCGaCGGGCGCGCc -3' miRNA: 3'- gCAG----UGGCGGCAGA-----------AGC-GCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 42052 | 0.79 | 0.140678 |
Target: 5'- --cCGCC-CCG-CUUUGCGGGCGCGCg -3' miRNA: 3'- gcaGUGGcGGCaGAAGCGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 98151 | 0.79 | 0.147824 |
Target: 5'- gCGcCGCCGCCGcUCggCGCGGGCcCGCu -3' miRNA: 3'- -GCaGUGGCGGC-AGaaGCGCCCGcGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 45619 | 0.79 | 0.147824 |
Target: 5'- cCGUCGCUGCCGcccggCggcagCGCGGcGCGCGCu -3' miRNA: 3'- -GCAGUGGCGGCa----Gaa---GCGCC-CGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 102986 | 0.78 | 0.163115 |
Target: 5'- cCG-CGCaCGCCGUCgcggcgugCGCGGGCGCGg -3' miRNA: 3'- -GCaGUG-GCGGCAGaa------GCGCCCGCGCg -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 43497 | 0.78 | 0.175502 |
Target: 5'- cCG-CGCCGCCGUCgaUCGCuacuGGGCgGCGCg -3' miRNA: 3'- -GCaGUGGCGGCAGa-AGCG----CCCG-CGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 57870 | 0.78 | 0.175502 |
Target: 5'- gGUCGCCGCCGUCgcaCGaGGGUGuCGCc -3' miRNA: 3'- gCAGUGGCGGCAGaa-GCgCCCGC-GCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 13111 | 0.78 | 0.175502 |
Target: 5'- uGUCGCgGCCGgggcgCGCGGGCgGCGCc -3' miRNA: 3'- gCAGUGgCGGCagaa-GCGCCCG-CGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 67512 | 0.77 | 0.179814 |
Target: 5'- aGcCGCCGCCGUCUcCGCcGGCGcCGCc -3' miRNA: 3'- gCaGUGGCGGCAGAaGCGcCCGC-GCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 33885 | 0.77 | 0.179814 |
Target: 5'- aGgCGCCGCCGcgCguggcCGCGGGCGUGCa -3' miRNA: 3'- gCaGUGGCGGCa-Gaa---GCGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 80182 | 0.77 | 0.179814 |
Target: 5'- aGUgCGCCGCCGccUCUgcggGCGGGUGCGCc -3' miRNA: 3'- gCA-GUGGCGGC--AGAag--CGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 47847 | 0.76 | 0.207699 |
Target: 5'- aCGUCGCaggagGUCGcgugCUgCGCGGGCGCGCg -3' miRNA: 3'- -GCAGUGg----CGGCa---GAaGCGCCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 106946 | 0.76 | 0.207699 |
Target: 5'- --aCGCCGCCGUggcgCGCaGGCGCGCg -3' miRNA: 3'- gcaGUGGCGGCAgaa-GCGcCCGCGCG- -5' |
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6346 | 3' | -60.6 | NC_001847.1 | + | 33771 | 0.76 | 0.207699 |
Target: 5'- uGUUGCUGCCGcugcagggCUUCGCGGggcuGCGCGCg -3' miRNA: 3'- gCAGUGGCGGCa-------GAAGCGCC----CGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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