miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 132763 1.11 0.000792
Target:  5'- gCGUCACCGCCGUCUUCGCGGGCGCGCg -3'
miRNA:   3'- -GCAGUGGCGGCAGAAGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 80528 0.83 0.080626
Target:  5'- uGUCGgCGCaCGUCggcaucggCGCGGGCGCGCg -3'
miRNA:   3'- gCAGUgGCG-GCAGaa------GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 56301 0.81 0.098927
Target:  5'- aGUCugCGgCGUCgcgCgGCGGGCGCGCg -3'
miRNA:   3'- gCAGugGCgGCAGaa-G-CGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 108344 0.81 0.101474
Target:  5'- gCGUCACgGCCGUCgucugcggcgCGCaggaGGGCGCGCg -3'
miRNA:   3'- -GCAGUGgCGGCAGaa--------GCG----CCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 38134 0.8 0.124179
Target:  5'- cCGggCACCGa-GUCUUCGCGcGGCGCGCc -3'
miRNA:   3'- -GCa-GUGGCggCAGAAGCGC-CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 4401 0.79 0.133184
Target:  5'- gGUCGCCGCCGUCgacgccgacgGCGGcgaGCGCGCg -3'
miRNA:   3'- gCAGUGGCGGCAGaag-------CGCC---CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 85564 0.79 0.140678
Target:  5'- uGUCcucgGCCGUCGUCUcaacggcgccgUCGaCGGGCGCGCc -3'
miRNA:   3'- gCAG----UGGCGGCAGA-----------AGC-GCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 42052 0.79 0.140678
Target:  5'- --cCGCC-CCG-CUUUGCGGGCGCGCg -3'
miRNA:   3'- gcaGUGGcGGCaGAAGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 98151 0.79 0.147824
Target:  5'- gCGcCGCCGCCGcUCggCGCGGGCcCGCu -3'
miRNA:   3'- -GCaGUGGCGGC-AGaaGCGCCCGcGCG- -5'
6346 3' -60.6 NC_001847.1 + 45619 0.79 0.147824
Target:  5'- cCGUCGCUGCCGcccggCggcagCGCGGcGCGCGCu -3'
miRNA:   3'- -GCAGUGGCGGCa----Gaa---GCGCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 102986 0.78 0.163115
Target:  5'- cCG-CGCaCGCCGUCgcggcgugCGCGGGCGCGg -3'
miRNA:   3'- -GCaGUG-GCGGCAGaa------GCGCCCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 43497 0.78 0.175502
Target:  5'- cCG-CGCCGCCGUCgaUCGCuacuGGGCgGCGCg -3'
miRNA:   3'- -GCaGUGGCGGCAGa-AGCG----CCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 57870 0.78 0.175502
Target:  5'- gGUCGCCGCCGUCgcaCGaGGGUGuCGCc -3'
miRNA:   3'- gCAGUGGCGGCAGaa-GCgCCCGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 13111 0.78 0.175502
Target:  5'- uGUCGCgGCCGgggcgCGCGGGCgGCGCc -3'
miRNA:   3'- gCAGUGgCGGCagaa-GCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 67512 0.77 0.179814
Target:  5'- aGcCGCCGCCGUCUcCGCcGGCGcCGCc -3'
miRNA:   3'- gCaGUGGCGGCAGAaGCGcCCGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 33885 0.77 0.179814
Target:  5'- aGgCGCCGCCGcgCguggcCGCGGGCGUGCa -3'
miRNA:   3'- gCaGUGGCGGCa-Gaa---GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 80182 0.77 0.179814
Target:  5'- aGUgCGCCGCCGccUCUgcggGCGGGUGCGCc -3'
miRNA:   3'- gCA-GUGGCGGC--AGAag--CGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 47847 0.76 0.207699
Target:  5'- aCGUCGCaggagGUCGcgugCUgCGCGGGCGCGCg -3'
miRNA:   3'- -GCAGUGg----CGGCa---GAaGCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 106946 0.76 0.207699
Target:  5'- --aCGCCGCCGUggcgCGCaGGCGCGCg -3'
miRNA:   3'- gcaGUGGCGGCAgaa-GCGcCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 33771 0.76 0.207699
Target:  5'- uGUUGCUGCCGcugcagggCUUCGCGGggcuGCGCGCg -3'
miRNA:   3'- gCAGUGGCGGCa-------GAAGCGCC----CGCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.