miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 280 0.68 0.579339
Target:  5'- gGggGCCGCCGagcccgCGCGGGCGcCGUc -3'
miRNA:   3'- gCagUGGCGGCagaa--GCGCCCGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 604 0.66 0.687426
Target:  5'- --cCGCgGCCG-CUcCGCaGcGGCGCGCg -3'
miRNA:   3'- gcaGUGgCGGCaGAaGCG-C-CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 1093 0.67 0.638335
Target:  5'- cCGggCGCCGCgGc---CGCGGGCgGCGCc -3'
miRNA:   3'- -GCa-GUGGCGgCagaaGCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 1185 0.66 0.716431
Target:  5'- gGcCACCGCCG-CggccggcagcUCGuCGGGCGCcaGCu -3'
miRNA:   3'- gCaGUGGCGGCaGa---------AGC-GCCCGCG--CG- -5'
6346 3' -60.6 NC_001847.1 + 1420 0.71 0.422466
Target:  5'- aCGggCACCGCgGUg--CGCGGGCccagGCGCg -3'
miRNA:   3'- -GCa-GUGGCGgCAgaaGCGCCCG----CGCG- -5'
6346 3' -60.6 NC_001847.1 + 1723 0.72 0.389311
Target:  5'- aGcCGCCGCCG-CgcCGCGGccagccGCGCGCa -3'
miRNA:   3'- gCaGUGGCGGCaGaaGCGCC------CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 1950 0.69 0.540622
Target:  5'- cCGcCGgCGCuCGUCcUCGcCGGGCgGCGCc -3'
miRNA:   3'- -GCaGUgGCG-GCAGaAGC-GCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 2181 0.67 0.648192
Target:  5'- cCG-CGCCGCCugggCggcgUGCGGGCGCa- -3'
miRNA:   3'- -GCaGUGGCGGca--Gaa--GCGCCCGCGcg -5'
6346 3' -60.6 NC_001847.1 + 2229 0.73 0.328321
Target:  5'- aG-CGCCGCgGcgCUgggCGCGGGCGUGUg -3'
miRNA:   3'- gCaGUGGCGgCa-GAa--GCGCCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 2279 0.68 0.598931
Target:  5'- gCGgaaGCCGCCGUCggCGgcggggccgcCGGGCG-GCa -3'
miRNA:   3'- -GCag-UGGCGGCAGaaGC----------GCCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 2541 0.67 0.66197
Target:  5'- gCGggACCGCUgcucuccggcgggcuGUCUucggCGCGGGCGCcuGCg -3'
miRNA:   3'- -GCagUGGCGG---------------CAGAa---GCGCCCGCG--CG- -5'
6346 3' -60.6 NC_001847.1 + 2644 0.66 0.687426
Target:  5'- cCGUCGCCGCuugcggCGcCUUCGCccGGCG-GCu -3'
miRNA:   3'- -GCAGUGGCG------GCaGAAGCGc-CCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 2849 0.69 0.521583
Target:  5'- gGUCcgccauGCCGCUG-CgacUCGCGGGCGuCGUc -3'
miRNA:   3'- gCAG------UGGCGGCaGa--AGCGCCCGC-GCG- -5'
6346 3' -60.6 NC_001847.1 + 2979 0.66 0.735448
Target:  5'- aG-CGCCGCCGgggcCggCGCuGGagccGCGCGCg -3'
miRNA:   3'- gCaGUGGCGGCa---GaaGCG-CC----CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 3015 0.67 0.628473
Target:  5'- --cCACCGCg----UCGCGGGCcGCGCc -3'
miRNA:   3'- gcaGUGGCGgcagaAGCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 3069 0.68 0.569593
Target:  5'- gGUgCGCCGCCag---CGCGuccGGCGCGCa -3'
miRNA:   3'- gCA-GUGGCGGcagaaGCGC---CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 3193 0.73 0.31422
Target:  5'- -cUCGCCGCCGUCgccgccaUCGCcGGCGCa- -3'
miRNA:   3'- gcAGUGGCGGCAGa------AGCGcCCGCGcg -5'
6346 3' -60.6 NC_001847.1 + 3554 0.66 0.687426
Target:  5'- uG-CACgCGCCG-CUgcaGCaGGCGCGCc -3'
miRNA:   3'- gCaGUG-GCGGCaGAag-CGcCCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 3789 0.68 0.617628
Target:  5'- cCG-CGCCGCCGaagCgcaCGCGgccgggcggcggcGGCGCGCu -3'
miRNA:   3'- -GCaGUGGCGGCa--Gaa-GCGC-------------CCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 3887 0.67 0.648192
Target:  5'- cCGUCGCgcggCGCCGcggCguagccagCGCGGGCGC-Cg -3'
miRNA:   3'- -GCAGUG----GCGGCa--Gaa------GCGCCCGCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.