miRNA display CGI


Results 21 - 40 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 3' -60.6 NC_001847.1 + 109416 0.66 0.735448
Target:  5'- cCGcCGCCGCuucuCGUcCUUCuCGGGC-CGCa -3'
miRNA:   3'- -GCaGUGGCG----GCA-GAAGcGCCCGcGCG- -5'
6346 3' -60.6 NC_001847.1 + 87561 0.66 0.735448
Target:  5'- ---uGCCGCCGgcCUUCcuCGGcGCGUGCg -3'
miRNA:   3'- gcagUGGCGGCa-GAAGc-GCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 88241 0.66 0.735448
Target:  5'- cCGagGCCGgCG-CggCGCGGG-GCGCc -3'
miRNA:   3'- -GCagUGGCgGCaGaaGCGCCCgCGCG- -5'
6346 3' -60.6 NC_001847.1 + 119374 0.66 0.735448
Target:  5'- -cUUGCCGCCGgCgaaaGCGGGC-CGCc -3'
miRNA:   3'- gcAGUGGCGGCaGaag-CGCCCGcGCG- -5'
6346 3' -60.6 NC_001847.1 + 83972 0.66 0.735448
Target:  5'- cCGUCGCCgggcaaacgGCCGUCgaguaCGGGUccaGCGCc -3'
miRNA:   3'- -GCAGUGG---------CGGCAGaagc-GCCCG---CGCG- -5'
6346 3' -60.6 NC_001847.1 + 59376 0.66 0.735448
Target:  5'- --cCGCgGCCGUgUUCacccgcgcgGCGGGCGaGCa -3'
miRNA:   3'- gcaGUGgCGGCAgAAG---------CGCCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 2979 0.66 0.735448
Target:  5'- aG-CGCCGCCGgggcCggCGCuGGagccGCGCGCg -3'
miRNA:   3'- gCaGUGGCGGCa---GaaGCG-CC----CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 101811 0.66 0.735448
Target:  5'- gCGcCACCcaggccgcgagGCCGUCUUCG-GuGUGCGCc -3'
miRNA:   3'- -GCaGUGG-----------CGGCAGAAGCgCcCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 95561 0.66 0.729775
Target:  5'- aCGUCugUcgaacccuguucgggGCgGcCUUCGCGGaCGCGCc -3'
miRNA:   3'- -GCAGugG---------------CGgCaGAAGCGCCcGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 89119 0.66 0.725977
Target:  5'- aG-CGCCGCCccgGUggUCGUGcGCGCGCu -3'
miRNA:   3'- gCaGUGGCGG---CAgaAGCGCcCGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 110925 0.66 0.725977
Target:  5'- aCGUgGCC-CCGUacaacCGCgGGGCGgGCg -3'
miRNA:   3'- -GCAgUGGcGGCAgaa--GCG-CCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 88803 0.66 0.725977
Target:  5'- cCGaUGCCGCCGacgCggccCGCGGGCG-GCc -3'
miRNA:   3'- -GCaGUGGCGGCa--Gaa--GCGCCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 86434 0.66 0.725977
Target:  5'- gCGgCGCUGCgCGg---CGCGGGCaGCGUg -3'
miRNA:   3'- -GCaGUGGCG-GCagaaGCGCCCG-CGCG- -5'
6346 3' -60.6 NC_001847.1 + 15313 0.66 0.725977
Target:  5'- gCGUCggggGCCGCgGgCguagCGgGGGCGgGCg -3'
miRNA:   3'- -GCAG----UGGCGgCaGaa--GCgCCCGCgCG- -5'
6346 3' -60.6 NC_001847.1 + 73067 0.66 0.725977
Target:  5'- aCG-CGCCGCgGg---CGCGGaagucgacGCGCGCa -3'
miRNA:   3'- -GCaGUGGCGgCagaaGCGCC--------CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 82485 0.66 0.725977
Target:  5'- aCGggGCCGCCGaaggCguaggUCGCGucuGGCGCGg -3'
miRNA:   3'- -GCagUGGCGGCa---Ga----AGCGC---CCGCGCg -5'
6346 3' -60.6 NC_001847.1 + 90356 0.66 0.725977
Target:  5'- aGcCGCCGUCGUCcguccCGCcaaGCGCGCg -3'
miRNA:   3'- gCaGUGGCGGCAGaa---GCGcc-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 116295 0.66 0.725977
Target:  5'- gCGUgCcCCGCUGaCccgUGCGGcGCGCGCg -3'
miRNA:   3'- -GCA-GuGGCGGCaGaa-GCGCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 78854 0.66 0.725977
Target:  5'- aGUaGCUGgUGUgcUCGCGGuGCGCGCc -3'
miRNA:   3'- gCAgUGGCgGCAgaAGCGCC-CGCGCG- -5'
6346 3' -60.6 NC_001847.1 + 127393 0.66 0.725977
Target:  5'- cCGUCgggcuugcccugGCCGCCGcCUcCGCGccCGCGCc -3'
miRNA:   3'- -GCAG------------UGGCGGCaGAaGCGCccGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.