miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 65268 0.72 0.34189
Target:  5'- -cGCGGCCgGUccGCA--GCGGCGGGc- -3'
miRNA:   3'- uaCGCCGGgCA--CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 125517 0.72 0.349664
Target:  5'- -gGCGGgCCG-GCGcgGCGGCGGGc- -3'
miRNA:   3'- uaCGCCgGGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 81219 0.72 0.349664
Target:  5'- gAUGCaGGCUCGgcgGCAGcGGCGGCGGGc- -3'
miRNA:   3'- -UACG-CCGGGCa--CGUU-UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 37476 0.72 0.357562
Target:  5'- -gGCcgGGCCCGgccugGCA--GCGGCGGGUc -3'
miRNA:   3'- uaCG--CCGGGCa----CGUuuUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 2095 0.72 0.357562
Target:  5'- -cGgGGCCCGcGCG--GCGGCGGGc- -3'
miRNA:   3'- uaCgCCGGGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 104908 0.72 0.357562
Target:  5'- -cGgGGCCCGcGCG--GCGGCGGGc- -3'
miRNA:   3'- uaCgCCGGGCaCGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 49714 0.72 0.357562
Target:  5'- -cGCGgcGCCCGUGCAAGugGGCGccggcgaggcGGUg -3'
miRNA:   3'- uaCGC--CGGGCACGUUUugCCGC----------CCAa -5'
6346 5' -59.2 NC_001847.1 + 132648 0.72 0.365584
Target:  5'- -gGCGGCCCucGCGAcgucuucacacGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGGcaCGUU-----------UUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 25720 0.71 0.381999
Target:  5'- cUGCGGCCCGagaagGaCGAGaagcgGCGGCGGGc- -3'
miRNA:   3'- uACGCCGGGCa----C-GUUU-----UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 28789 0.71 0.390388
Target:  5'- -aGCGGCgCGUGCAGGGCuGcCGGGg- -3'
miRNA:   3'- uaCGCCGgGCACGUUUUGcC-GCCCaa -5'
6346 5' -59.2 NC_001847.1 + 131602 0.71 0.390388
Target:  5'- -aGCGGCgCGUGCAGGGCuGcCGGGg- -3'
miRNA:   3'- uaCGCCGgGCACGUUUUGcC-GCCCaa -5'
6346 5' -59.2 NC_001847.1 + 127340 0.71 0.39804
Target:  5'- -gGCGGCCgGcUGCcgcggcaGGGGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGGgC-ACG-------UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 65115 0.71 0.398896
Target:  5'- -cGCGGCUCG-GCu-GGCGGUGGGg- -3'
miRNA:   3'- uaCGCCGGGCaCGuuUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 54681 0.71 0.407523
Target:  5'- -cGCGGCCCGacgGCG--GCGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCa--CGUuuUGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 125562 0.71 0.407523
Target:  5'- cUGCGGCUCGaucGCGgccgcGGGCGGCGGGc- -3'
miRNA:   3'- uACGCCGGGCa--CGU-----UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 68058 0.71 0.416265
Target:  5'- -gGCGGCCuCGcgGCGcgccuGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGG-GCa-CGUuu---UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 33333 0.71 0.416265
Target:  5'- -gGCGGCgCGcUGCGuGACGGUGGGc- -3'
miRNA:   3'- uaCGCCGgGC-ACGUuUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 60738 0.71 0.425121
Target:  5'- -gGCGGCCCGcGCGcgcGCGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCaCGUuu-UGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 7239 0.71 0.425121
Target:  5'- -aGCGGCuggucggguggCUGUGCGGGcGCGGCGGGg- -3'
miRNA:   3'- uaCGCCG-----------GGCACGUUU-UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 30401 0.7 0.434088
Target:  5'- -gGCGGCCCGaguggccgccGCGccGCGGCGGGc- -3'
miRNA:   3'- uaCGCCGGGCa---------CGUuuUGCCGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.