miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 12937 0.66 0.702581
Target:  5'- -cGCGuGUcgUCGUGCGgugGGGCGGCGGGc- -3'
miRNA:   3'- uaCGC-CG--GGCACGU---UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 13535 0.68 0.549186
Target:  5'- -aGCGGCagcaaccgccgCCGggGCGGcGCGGUGGGUUg -3'
miRNA:   3'- uaCGCCG-----------GGCa-CGUUuUGCCGCCCAA- -5'
6346 5' -59.2 NC_001847.1 + 13960 0.77 0.175647
Target:  5'- cUGCGGCCCGUgggagcccgccccugGCcggcAAGCGGCGGGUc -3'
miRNA:   3'- uACGCCGGGCA---------------CGu---UUUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 14309 0.66 0.692453
Target:  5'- -cGCGGCCCcgcucccgcUGCuc-GCGGUGGGg- -3'
miRNA:   3'- uaCGCCGGGc--------ACGuuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 15073 0.66 0.672053
Target:  5'- -gGCGGCCCGgggaucgccUGCG--GCaGCGGGg- -3'
miRNA:   3'- uaCGCCGGGC---------ACGUuuUGcCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 15516 0.68 0.60006
Target:  5'- gAUGCGGCUCG-GCGgGAGCcGCGGGc- -3'
miRNA:   3'- -UACGCCGGGCaCGU-UUUGcCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 15769 0.73 0.325232
Target:  5'- -gGCGGCCCGcuuucgccggcgGCAAGcgccgcGCGGCGGGa- -3'
miRNA:   3'- uaCGCCGGGCa-----------CGUUU------UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 17280 0.74 0.258421
Target:  5'- aGUGCaGGCgCGUGgAGcGCGGCGGGUa -3'
miRNA:   3'- -UACG-CCGgGCACgUUuUGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 19164 0.67 0.620626
Target:  5'- -cGC-GCCCGUuguuaccccgcGCAGcACGGCGGGg- -3'
miRNA:   3'- uaCGcCGGGCA-----------CGUUuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 20252 0.76 0.202243
Target:  5'- cUGCGGCCgCGagaGCGAGACGGCGaGGUc -3'
miRNA:   3'- uACGCCGG-GCa--CGUUUUGCCGC-CCAa -5'
6346 5' -59.2 NC_001847.1 + 21744 0.66 0.722648
Target:  5'- -cGcCGGCCCGcGCGc-GCGGgGGGg- -3'
miRNA:   3'- uaC-GCCGGGCaCGUuuUGCCgCCCaa -5'
6346 5' -59.2 NC_001847.1 + 25720 0.71 0.381999
Target:  5'- cUGCGGCCCGagaagGaCGAGaagcgGCGGCGGGc- -3'
miRNA:   3'- uACGCCGGGCa----C-GUUU-----UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 26490 0.66 0.712649
Target:  5'- -gGCgGGCCUgGUGCAAGGCGggccugccgggcGCGGGg- -3'
miRNA:   3'- uaCG-CCGGG-CACGUUUUGC------------CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 27755 0.66 0.672053
Target:  5'- uUGCGGCggggggCUGUGCGgggcguacaauaAAcugcGCGGCGGGUg -3'
miRNA:   3'- uACGCCG------GGCACGU------------UU----UGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 28196 0.66 0.692453
Target:  5'- -cGCGcGCCUGcGCGccACGGCGGcGUUc -3'
miRNA:   3'- uaCGC-CGGGCaCGUuuUGCCGCC-CAA- -5'
6346 5' -59.2 NC_001847.1 + 28307 0.7 0.461632
Target:  5'- -aGCGGCCCc-GCGAGA-GGCGGGc- -3'
miRNA:   3'- uaCGCCGGGcaCGUUUUgCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 28540 0.66 0.722648
Target:  5'- --cCGGCCgCGUGCGcuucGGCGGCGcGGg- -3'
miRNA:   3'- uacGCCGG-GCACGUu---UUGCCGC-CCaa -5'
6346 5' -59.2 NC_001847.1 + 28789 0.71 0.390388
Target:  5'- -aGCGGCgCGUGCAGGGCuGcCGGGg- -3'
miRNA:   3'- uaCGCCGgGCACGUUUUGcC-GCCCaa -5'
6346 5' -59.2 NC_001847.1 + 29046 0.66 0.722648
Target:  5'- -cGcCGGCagaCGUGCugcAGGCGGUGGGc- -3'
miRNA:   3'- uaC-GCCGg--GCACGu--UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 29320 0.66 0.682274
Target:  5'- -cGCGGCCC--GCGAcGCGGUGGa-- -3'
miRNA:   3'- uaCGCCGGGcaCGUUuUGCCGCCcaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.