Results 21 - 40 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6346 | 5' | -59.2 | NC_001847.1 | + | 12937 | 0.66 | 0.702581 |
Target: 5'- -cGCGuGUcgUCGUGCGgugGGGCGGCGGGc- -3' miRNA: 3'- uaCGC-CG--GGCACGU---UUUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 13535 | 0.68 | 0.549186 |
Target: 5'- -aGCGGCagcaaccgccgCCGggGCGGcGCGGUGGGUUg -3' miRNA: 3'- uaCGCCG-----------GGCa-CGUUuUGCCGCCCAA- -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 13960 | 0.77 | 0.175647 |
Target: 5'- cUGCGGCCCGUgggagcccgccccugGCcggcAAGCGGCGGGUc -3' miRNA: 3'- uACGCCGGGCA---------------CGu---UUUGCCGCCCAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 14309 | 0.66 | 0.692453 |
Target: 5'- -cGCGGCCCcgcucccgcUGCuc-GCGGUGGGg- -3' miRNA: 3'- uaCGCCGGGc--------ACGuuuUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 15073 | 0.66 | 0.672053 |
Target: 5'- -gGCGGCCCGgggaucgccUGCG--GCaGCGGGg- -3' miRNA: 3'- uaCGCCGGGC---------ACGUuuUGcCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 15516 | 0.68 | 0.60006 |
Target: 5'- gAUGCGGCUCG-GCGgGAGCcGCGGGc- -3' miRNA: 3'- -UACGCCGGGCaCGU-UUUGcCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 15769 | 0.73 | 0.325232 |
Target: 5'- -gGCGGCCCGcuuucgccggcgGCAAGcgccgcGCGGCGGGa- -3' miRNA: 3'- uaCGCCGGGCa-----------CGUUU------UGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 17280 | 0.74 | 0.258421 |
Target: 5'- aGUGCaGGCgCGUGgAGcGCGGCGGGUa -3' miRNA: 3'- -UACG-CCGgGCACgUUuUGCCGCCCAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 19164 | 0.67 | 0.620626 |
Target: 5'- -cGC-GCCCGUuguuaccccgcGCAGcACGGCGGGg- -3' miRNA: 3'- uaCGcCGGGCA-----------CGUUuUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 20252 | 0.76 | 0.202243 |
Target: 5'- cUGCGGCCgCGagaGCGAGACGGCGaGGUc -3' miRNA: 3'- uACGCCGG-GCa--CGUUUUGCCGC-CCAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 21744 | 0.66 | 0.722648 |
Target: 5'- -cGcCGGCCCGcGCGc-GCGGgGGGg- -3' miRNA: 3'- uaC-GCCGGGCaCGUuuUGCCgCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 25720 | 0.71 | 0.381999 |
Target: 5'- cUGCGGCCCGagaagGaCGAGaagcgGCGGCGGGc- -3' miRNA: 3'- uACGCCGGGCa----C-GUUU-----UGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 26490 | 0.66 | 0.712649 |
Target: 5'- -gGCgGGCCUgGUGCAAGGCGggccugccgggcGCGGGg- -3' miRNA: 3'- uaCG-CCGGG-CACGUUUUGC------------CGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 27755 | 0.66 | 0.672053 |
Target: 5'- uUGCGGCggggggCUGUGCGgggcguacaauaAAcugcGCGGCGGGUg -3' miRNA: 3'- uACGCCG------GGCACGU------------UU----UGCCGCCCAa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 28196 | 0.66 | 0.692453 |
Target: 5'- -cGCGcGCCUGcGCGccACGGCGGcGUUc -3' miRNA: 3'- uaCGC-CGGGCaCGUuuUGCCGCC-CAA- -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 28307 | 0.7 | 0.461632 |
Target: 5'- -aGCGGCCCc-GCGAGA-GGCGGGc- -3' miRNA: 3'- uaCGCCGGGcaCGUUUUgCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 28540 | 0.66 | 0.722648 |
Target: 5'- --cCGGCCgCGUGCGcuucGGCGGCGcGGg- -3' miRNA: 3'- uacGCCGG-GCACGUu---UUGCCGC-CCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 28789 | 0.71 | 0.390388 |
Target: 5'- -aGCGGCgCGUGCAGGGCuGcCGGGg- -3' miRNA: 3'- uaCGCCGgGCACGUUUUGcC-GCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 29046 | 0.66 | 0.722648 |
Target: 5'- -cGcCGGCagaCGUGCugcAGGCGGUGGGc- -3' miRNA: 3'- uaC-GCCGg--GCACGu--UUUGCCGCCCaa -5' |
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6346 | 5' | -59.2 | NC_001847.1 | + | 29320 | 0.66 | 0.682274 |
Target: 5'- -cGCGGCCC--GCGAcGCGGUGGa-- -3' miRNA: 3'- uaCGCCGGGcaCGUUuUGCCGCCcaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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