miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6346 5' -59.2 NC_001847.1 + 105170 0.66 0.672053
Target:  5'- -cGcCGGCCCGgccGCGucGGCGGCGGcGg- -3'
miRNA:   3'- uaC-GCCGGGCa--CGUu-UUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 51299 0.66 0.672053
Target:  5'- -cGCGcaauuccaGCCCGUGCu--GCGGCGGc-- -3'
miRNA:   3'- uaCGC--------CGGGCACGuuuUGCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 134214 0.66 0.672053
Target:  5'- -cGCGGgCCGaggGCG--GCGGUGGGa- -3'
miRNA:   3'- uaCGCCgGGCa--CGUuuUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 27755 0.66 0.672053
Target:  5'- uUGCGGCggggggCUGUGCGgggcguacaauaAAcugcGCGGCGGGUg -3'
miRNA:   3'- uACGCCG------GGCACGU------------UU----UGCCGCCCAa -5'
6346 5' -59.2 NC_001847.1 + 108608 0.66 0.672053
Target:  5'- -cGCGcGCCgaaaaCGUGCuccggGGGACGGCGGGc- -3'
miRNA:   3'- uaCGC-CGG-----GCACG-----UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 68842 0.66 0.672053
Target:  5'- -cGCGaagaGCUCGggcGCGAGGCGGCGGcGUg -3'
miRNA:   3'- uaCGC----CGGGCa--CGUUUUGCCGCC-CAa -5'
6346 5' -59.2 NC_001847.1 + 2357 0.66 0.672053
Target:  5'- -cGcCGGCCCGgccGCGucGGCGGCGGcGg- -3'
miRNA:   3'- uaC-GCCGGGCa--CGUu-UUGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 15073 0.66 0.672053
Target:  5'- -gGCGGCCCGgggaucgccUGCG--GCaGCGGGg- -3'
miRNA:   3'- uaCGCCGGGC---------ACGUuuUGcCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 110926 0.66 0.672053
Target:  5'- -cGUGGcCCCGUacaaccGCGGGGCGgGCGGGc- -3'
miRNA:   3'- uaCGCC-GGGCA------CGUUUUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 2268 0.66 0.672053
Target:  5'- -gGCGGCaCGcgGCGGAagccgccgucgGCGGCGGGg- -3'
miRNA:   3'- uaCGCCGgGCa-CGUUU-----------UGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 8113 0.66 0.672053
Target:  5'- -cGUGGcCCCGUacaaccGCGGGGCGgGCGGGc- -3'
miRNA:   3'- uaCGCC-GGGCA------CGUUUUGC-CGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 53762 0.66 0.672053
Target:  5'- -gGCGGCCCGagGCGGcGAgGGCGGc-- -3'
miRNA:   3'- uaCGCCGGGCa-CGUU-UUgCCGCCcaa -5'
6346 5' -59.2 NC_001847.1 + 59735 0.67 0.661799
Target:  5'- cGUGUGGCCCGcgaUGCccgccucGCGGCGGcGa- -3'
miRNA:   3'- -UACGCCGGGC---ACGuuu----UGCCGCC-Caa -5'
6346 5' -59.2 NC_001847.1 + 54498 0.67 0.661799
Target:  5'- -gGCGGCgCCGggGCcgggguggGGGGCGGUGGGg- -3'
miRNA:   3'- uaCGCCG-GGCa-CG--------UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 29464 0.67 0.651521
Target:  5'- -gGCGGCCCGcGCGu--CGGCcuGGGc- -3'
miRNA:   3'- uaCGCCGGGCaCGUuuuGCCG--CCCaa -5'
6346 5' -59.2 NC_001847.1 + 66483 0.67 0.651521
Target:  5'- -cGCGGCacguCGUGCGugucggccAGCGGCGcGGUg -3'
miRNA:   3'- uaCGCCGg---GCACGUu-------UUGCCGC-CCAa -5'
6346 5' -59.2 NC_001847.1 + 132277 0.67 0.651521
Target:  5'- -gGCGGCCCGcGCGu--CGGCcuGGGc- -3'
miRNA:   3'- uaCGCCGGGCaCGUuuuGCCG--CCCaa -5'
6346 5' -59.2 NC_001847.1 + 78346 0.67 0.641227
Target:  5'- -cGcCGGcCCCGUgaGCGcgacGAACGGCGGGc- -3'
miRNA:   3'- uaC-GCC-GGGCA--CGU----UUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 53868 0.67 0.641227
Target:  5'- -gGCGGCgCCGaccGCcgcgGGGGCGGCGGGc- -3'
miRNA:   3'- uaCGCCG-GGCa--CG----UUUUGCCGCCCaa -5'
6346 5' -59.2 NC_001847.1 + 30812 0.67 0.641227
Target:  5'- cUGCcGCCgCG-GCAAAcacgGCGGCGGGg- -3'
miRNA:   3'- uACGcCGG-GCaCGUUU----UGCCGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.