miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 3' -55.4 NC_001847.1 + 132351 1.09 0.002457
Target:  5'- gAGCGACGACUUGAGCCUCUUCGGCUCu -3'
miRNA:   3'- -UCGCUGCUGAACUCGGAGAAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 101594 0.75 0.396678
Target:  5'- cGCGGCGuCUgccGCCUCUUCGGCg- -3'
miRNA:   3'- uCGCUGCuGAacuCGGAGAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 96548 0.74 0.450589
Target:  5'- aGGCGACGcgcgcgcucaACgccagGAGCCUCcgCGGCUCc -3'
miRNA:   3'- -UCGCUGC----------UGaa---CUCGGAGaaGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 107126 0.74 0.459961
Target:  5'- uGGCGGCGGCUaUGAcgGCCgCUUCGGC-Cg -3'
miRNA:   3'- -UCGCUGCUGA-ACU--CGGaGAAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 4313 0.74 0.459961
Target:  5'- uGGCGGCGGCUaUGAcgGCCgCUUCGGC-Cg -3'
miRNA:   3'- -UCGCUGCUGA-ACU--CGGaGAAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 71103 0.74 0.469436
Target:  5'- aGGCGAgaGGCggagUGGuGCCUCUUCGGCg- -3'
miRNA:   3'- -UCGCUg-CUGa---ACU-CGGAGAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 116401 0.73 0.506307
Target:  5'- cGGCGGCGGCgcucUGGGCCccgggccgcgcgCUUgGGCUCg -3'
miRNA:   3'- -UCGCUGCUGa---ACUCGGa-----------GAAgCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 15385 0.73 0.528212
Target:  5'- gGGCGGuCGGCgucggggcugGGGCCgggUUUCGGCUCg -3'
miRNA:   3'- -UCGCU-GCUGaa--------CUCGGa--GAAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 12458 0.72 0.56887
Target:  5'- cGCGcGCGGCg-GAGCCUCcgCGGCUUc -3'
miRNA:   3'- uCGC-UGCUGaaCUCGGAGaaGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 116552 0.72 0.599869
Target:  5'- aGGCGACGugUgccUGGGCgaCUUUGGCg- -3'
miRNA:   3'- -UCGCUGCugA---ACUCGgaGAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 21364 0.72 0.610261
Target:  5'- cGuCGGCGGCUcgGGccGCCUCgggCGGCUCg -3'
miRNA:   3'- uC-GCUGCUGAa-CU--CGGAGaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 74721 0.71 0.631089
Target:  5'- cGCGugGACgccGAGCCU--UCGGCg- -3'
miRNA:   3'- uCGCugCUGaa-CUCGGAgaAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 66245 0.71 0.631089
Target:  5'- cGCGGCGGCgcucggcaUGcugggccggggaGGCCUCUUCGGCcCg -3'
miRNA:   3'- uCGCUGCUGa-------AC------------UCGGAGAAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 89051 0.71 0.662314
Target:  5'- gGGCGACGGCaUGGcgcGCCgggUUUCGGCg- -3'
miRNA:   3'- -UCGCUGCUGaACU---CGGa--GAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 103950 0.7 0.672684
Target:  5'- cAGCGGCGGC----GCCUCggcgcgCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGaacuCGGAGaa----GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 1137 0.7 0.672684
Target:  5'- cAGCGGCGGC----GCCUCggcgcgCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGaacuCGGAGaa----GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 15588 0.7 0.672684
Target:  5'- aGGCGGCGGCUcGuAGCC-CUUCGaCUCc -3'
miRNA:   3'- -UCGCUGCUGAaC-UCGGaGAAGCcGAG- -5'
6347 3' -55.4 NC_001847.1 + 45682 0.7 0.713727
Target:  5'- cGCGAUGcGCUUGuuggcguaGGCCUCcggugggCGGCUCa -3'
miRNA:   3'- uCGCUGC-UGAAC--------UCGGAGaa-----GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 67306 0.7 0.713727
Target:  5'- cGGCGACGGCccuuuUUGGGCCgcgCggacgccgCGGCUUu -3'
miRNA:   3'- -UCGCUGCUG-----AACUCGGa--Gaa------GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 53018 0.69 0.733854
Target:  5'- cAGCGGCGGCcgcUGcGCgCUCgggccUCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGa--ACuCG-GAGa----AGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.