miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 3' -55.4 NC_001847.1 + 107126 0.74 0.459961
Target:  5'- uGGCGGCGGCUaUGAcgGCCgCUUCGGC-Cg -3'
miRNA:   3'- -UCGCUGCUGA-ACU--CGGaGAAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 30538 0.68 0.827462
Target:  5'- cGCGACGuCgccGAGCUcgUCgcgCGGCUCc -3'
miRNA:   3'- uCGCUGCuGaa-CUCGG--AGaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 117877 0.67 0.860254
Target:  5'- -cCGGCGAC-UGGGCCUg--CGGCUg -3'
miRNA:   3'- ucGCUGCUGaACUCGGAgaaGCCGAg -5'
6347 3' -55.4 NC_001847.1 + 105190 0.66 0.902945
Target:  5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3'
miRNA:   3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 21364 0.72 0.610261
Target:  5'- cGuCGGCGGCUcgGGccGCCUCgggCGGCUCg -3'
miRNA:   3'- uC-GCUGCUGAa-CU--CGGAGaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 66245 0.71 0.631089
Target:  5'- cGCGGCGGCgcucggcaUGcugggccggggaGGCCUCUUCGGCcCg -3'
miRNA:   3'- uCGCUGCUGa-------AC------------UCGGAGAAGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 45682 0.7 0.713727
Target:  5'- cGCGAUGcGCUUGuuggcguaGGCCUCcggugggCGGCUCa -3'
miRNA:   3'- uCGCUGC-UGAAC--------UCGGAGaa-----GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 53018 0.69 0.733854
Target:  5'- cAGCGGCGGCcgcUGcGCgCUCgggccUCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGa--ACuCG-GAGa----AGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 34110 0.69 0.763335
Target:  5'- cGCGGCGGCg-GAGCCUg--CGGCg- -3'
miRNA:   3'- uCGCUGCUGaaCUCGGAgaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 37572 0.68 0.818784
Target:  5'- cGCGGCGGCgcuGGCCgCUgCGGCUg -3'
miRNA:   3'- uCGCUGCUGaacUCGGaGAaGCCGAg -5'
6347 3' -55.4 NC_001847.1 + 35910 0.68 0.800909
Target:  5'- uGgGACGGCgcguggGAGCCUUUguggCGGCg- -3'
miRNA:   3'- uCgCUGCUGaa----CUCGGAGAa---GCCGag -5'
6347 3' -55.4 NC_001847.1 + 112683 0.69 0.753616
Target:  5'- uGCGACGGCUccUGccGCCUCUgccGCUCg -3'
miRNA:   3'- uCGCUGCUGA--ACu-CGGAGAagcCGAG- -5'
6347 3' -55.4 NC_001847.1 + 71103 0.74 0.469436
Target:  5'- aGGCGAgaGGCggagUGGuGCCUCUUCGGCg- -3'
miRNA:   3'- -UCGCUg-CUGa---ACU-CGGAGAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 18093 0.68 0.80993
Target:  5'- gGGCGA-GGCUUccGCCUCcUCGGCg- -3'
miRNA:   3'- -UCGCUgCUGAAcuCGGAGaAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 12458 0.72 0.56887
Target:  5'- cGCGcGCGGCg-GAGCCUCcgCGGCUUc -3'
miRNA:   3'- uCGC-UGCUGaaCUCGGAGaaGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 88889 0.69 0.743786
Target:  5'- cGGCGGCGGCUcccGCCgggggCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGAacuCGGagaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 105770 0.68 0.80993
Target:  5'- cGCGGCGGCc---GCCUCggCGGCa- -3'
miRNA:   3'- uCGCUGCUGaacuCGGAGaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 14406 0.67 0.852359
Target:  5'- aGGaGGCGACc-GAGCCUCUgugcggGGCUCc -3'
miRNA:   3'- -UCgCUGCUGaaCUCGGAGAag----CCGAG- -5'
6347 3' -55.4 NC_001847.1 + 116552 0.72 0.599869
Target:  5'- aGGCGACGugUgccUGGGCgaCUUUGGCg- -3'
miRNA:   3'- -UCGCUGCugA---ACUCGgaGAAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 103950 0.7 0.672684
Target:  5'- cAGCGGCGGC----GCCUCggcgcgCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGaacuCGGAGaa----GCCGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.