Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6347 | 3' | -55.4 | NC_001847.1 | + | 107126 | 0.74 | 0.459961 |
Target: 5'- uGGCGGCGGCUaUGAcgGCCgCUUCGGC-Cg -3' miRNA: 3'- -UCGCUGCUGA-ACU--CGGaGAAGCCGaG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 30538 | 0.68 | 0.827462 |
Target: 5'- cGCGACGuCgccGAGCUcgUCgcgCGGCUCc -3' miRNA: 3'- uCGCUGCuGaa-CUCGG--AGaa-GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 117877 | 0.67 | 0.860254 |
Target: 5'- -cCGGCGAC-UGGGCCUg--CGGCUg -3' miRNA: 3'- ucGCUGCUGaACUCGGAgaaGCCGAg -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 105190 | 0.66 | 0.902945 |
Target: 5'- cGGCGGCGGCUUuucGCCggcgCcUCGGCcCa -3' miRNA: 3'- -UCGCUGCUGAAcu-CGGa---GaAGCCGaG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 21364 | 0.72 | 0.610261 |
Target: 5'- cGuCGGCGGCUcgGGccGCCUCgggCGGCUCg -3' miRNA: 3'- uC-GCUGCUGAa-CU--CGGAGaa-GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 66245 | 0.71 | 0.631089 |
Target: 5'- cGCGGCGGCgcucggcaUGcugggccggggaGGCCUCUUCGGCcCg -3' miRNA: 3'- uCGCUGCUGa-------AC------------UCGGAGAAGCCGaG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 45682 | 0.7 | 0.713727 |
Target: 5'- cGCGAUGcGCUUGuuggcguaGGCCUCcggugggCGGCUCa -3' miRNA: 3'- uCGCUGC-UGAAC--------UCGGAGaa-----GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 53018 | 0.69 | 0.733854 |
Target: 5'- cAGCGGCGGCcgcUGcGCgCUCgggccUCGGCUCc -3' miRNA: 3'- -UCGCUGCUGa--ACuCG-GAGa----AGCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 34110 | 0.69 | 0.763335 |
Target: 5'- cGCGGCGGCg-GAGCCUg--CGGCg- -3' miRNA: 3'- uCGCUGCUGaaCUCGGAgaaGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 37572 | 0.68 | 0.818784 |
Target: 5'- cGCGGCGGCgcuGGCCgCUgCGGCUg -3' miRNA: 3'- uCGCUGCUGaacUCGGaGAaGCCGAg -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 35910 | 0.68 | 0.800909 |
Target: 5'- uGgGACGGCgcguggGAGCCUUUguggCGGCg- -3' miRNA: 3'- uCgCUGCUGaa----CUCGGAGAa---GCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 112683 | 0.69 | 0.753616 |
Target: 5'- uGCGACGGCUccUGccGCCUCUgccGCUCg -3' miRNA: 3'- uCGCUGCUGA--ACu-CGGAGAagcCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 71103 | 0.74 | 0.469436 |
Target: 5'- aGGCGAgaGGCggagUGGuGCCUCUUCGGCg- -3' miRNA: 3'- -UCGCUg-CUGa---ACU-CGGAGAAGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 18093 | 0.68 | 0.80993 |
Target: 5'- gGGCGA-GGCUUccGCCUCcUCGGCg- -3' miRNA: 3'- -UCGCUgCUGAAcuCGGAGaAGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 12458 | 0.72 | 0.56887 |
Target: 5'- cGCGcGCGGCg-GAGCCUCcgCGGCUUc -3' miRNA: 3'- uCGC-UGCUGaaCUCGGAGaaGCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 88889 | 0.69 | 0.743786 |
Target: 5'- cGGCGGCGGCUcccGCCgggggCGGCUCc -3' miRNA: 3'- -UCGCUGCUGAacuCGGagaa-GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 105770 | 0.68 | 0.80993 |
Target: 5'- cGCGGCGGCc---GCCUCggCGGCa- -3' miRNA: 3'- uCGCUGCUGaacuCGGAGaaGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 14406 | 0.67 | 0.852359 |
Target: 5'- aGGaGGCGACc-GAGCCUCUgugcggGGCUCc -3' miRNA: 3'- -UCgCUGCUGaaCUCGGAGAag----CCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 116552 | 0.72 | 0.599869 |
Target: 5'- aGGCGACGugUgccUGGGCgaCUUUGGCg- -3' miRNA: 3'- -UCGCUGCugA---ACUCGgaGAAGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 103950 | 0.7 | 0.672684 |
Target: 5'- cAGCGGCGGC----GCCUCggcgcgCGGCUCc -3' miRNA: 3'- -UCGCUGCUGaacuCGGAGaa----GCCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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