Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6347 | 3' | -55.4 | NC_001847.1 | + | 104542 | 0.67 | 0.860254 |
Target: 5'- cGCGGCGGCcccgGGGCCgCUacgCGGCg- -3' miRNA: 3'- uCGCUGCUGaa--CUCGGaGAa--GCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 14406 | 0.67 | 0.852359 |
Target: 5'- aGGaGGCGACc-GAGCCUCUgugcggGGCUCc -3' miRNA: 3'- -UCgCUGCUGaaCUCGGAGAag----CCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 96304 | 0.67 | 0.852359 |
Target: 5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3' miRNA: 3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 96388 | 0.67 | 0.852359 |
Target: 5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3' miRNA: 3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 129454 | 0.67 | 0.835955 |
Target: 5'- aAGCGGCuACUUGAGCUgg--CGGC-Cg -3' miRNA: 3'- -UCGCUGcUGAACUCGGagaaGCCGaG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 30538 | 0.68 | 0.827462 |
Target: 5'- cGCGACGuCgccGAGCUcgUCgcgCGGCUCc -3' miRNA: 3'- uCGCUGCuGaa-CUCGG--AGaa-GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 37572 | 0.68 | 0.818784 |
Target: 5'- cGCGGCGGCgcuGGCCgCUgCGGCUg -3' miRNA: 3'- uCGCUGCUGaacUCGGaGAaGCCGAg -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 19007 | 0.68 | 0.80993 |
Target: 5'- gGGCGGCGcCcucGGCCUCUUCGcGCg- -3' miRNA: 3'- -UCGCUGCuGaacUCGGAGAAGC-CGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 105770 | 0.68 | 0.80993 |
Target: 5'- cGCGGCGGCc---GCCUCggCGGCa- -3' miRNA: 3'- uCGCUGCUGaacuCGGAGaaGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 18093 | 0.68 | 0.80993 |
Target: 5'- gGGCGA-GGCUUccGCCUCcUCGGCg- -3' miRNA: 3'- -UCGCUgCUGAAcuCGGAGaAGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 35910 | 0.68 | 0.800909 |
Target: 5'- uGgGACGGCgcguggGAGCCUUUguggCGGCg- -3' miRNA: 3'- uCgCUGCUGaa----CUCGGAGAa---GCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 114647 | 0.68 | 0.79173 |
Target: 5'- cGCGACGACgcgcGAGCCgUCUUC--CUCg -3' miRNA: 3'- uCGCUGCUGaa--CUCGG-AGAAGccGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 59245 | 0.69 | 0.772933 |
Target: 5'- cGGCGAUGGCgccggccaGGGCCaugaUUUGGCUCu -3' miRNA: 3'- -UCGCUGCUGaa------CUCGGag--AAGCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 34082 | 0.69 | 0.763335 |
Target: 5'- cGCGGCGGCcccgGGGCCggCcUCGGCg- -3' miRNA: 3'- uCGCUGCUGaa--CUCGGa-GaAGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 34110 | 0.69 | 0.763335 |
Target: 5'- cGCGGCGGCg-GAGCCUg--CGGCg- -3' miRNA: 3'- uCGCUGCUGaaCUCGGAgaaGCCGag -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 9870 | 0.69 | 0.753616 |
Target: 5'- uGCGACGGCUccUGccGCCUCUgccGCUCg -3' miRNA: 3'- uCGCUGCUGA--ACu-CGGAGAagcCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 112683 | 0.69 | 0.753616 |
Target: 5'- uGCGACGGCUccUGccGCCUCUgccGCUCg -3' miRNA: 3'- uCGCUGCUGA--ACu-CGGAGAagcCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 75738 | 0.69 | 0.753616 |
Target: 5'- cAGCGAUGACcgccGcGCCUCcgcCGGCUCc -3' miRNA: 3'- -UCGCUGCUGaa--CuCGGAGaa-GCCGAG- -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 130260 | 0.69 | 0.753616 |
Target: 5'- uGCGACGACaaaaUGGGCUUCcgcgUGGCUg -3' miRNA: 3'- uCGCUGCUGa---ACUCGGAGaa--GCCGAg -5' |
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6347 | 3' | -55.4 | NC_001847.1 | + | 88889 | 0.69 | 0.743786 |
Target: 5'- cGGCGGCGGCUcccGCCgggggCGGCUCc -3' miRNA: 3'- -UCGCUGCUGAacuCGGagaa-GCCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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