miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 3' -55.4 NC_001847.1 + 104542 0.67 0.860254
Target:  5'- cGCGGCGGCcccgGGGCCgCUacgCGGCg- -3'
miRNA:   3'- uCGCUGCUGaa--CUCGGaGAa--GCCGag -5'
6347 3' -55.4 NC_001847.1 + 14406 0.67 0.852359
Target:  5'- aGGaGGCGACc-GAGCCUCUgugcggGGCUCc -3'
miRNA:   3'- -UCgCUGCUGaaCUCGGAGAag----CCGAG- -5'
6347 3' -55.4 NC_001847.1 + 96304 0.67 0.852359
Target:  5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3'
miRNA:   3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 96388 0.67 0.852359
Target:  5'- cGGCGGCGGCaauggcgGGGCCggCggCGGCa- -3'
miRNA:   3'- -UCGCUGCUGaa-----CUCGGa-GaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 129454 0.67 0.835955
Target:  5'- aAGCGGCuACUUGAGCUgg--CGGC-Cg -3'
miRNA:   3'- -UCGCUGcUGAACUCGGagaaGCCGaG- -5'
6347 3' -55.4 NC_001847.1 + 30538 0.68 0.827462
Target:  5'- cGCGACGuCgccGAGCUcgUCgcgCGGCUCc -3'
miRNA:   3'- uCGCUGCuGaa-CUCGG--AGaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 37572 0.68 0.818784
Target:  5'- cGCGGCGGCgcuGGCCgCUgCGGCUg -3'
miRNA:   3'- uCGCUGCUGaacUCGGaGAaGCCGAg -5'
6347 3' -55.4 NC_001847.1 + 19007 0.68 0.80993
Target:  5'- gGGCGGCGcCcucGGCCUCUUCGcGCg- -3'
miRNA:   3'- -UCGCUGCuGaacUCGGAGAAGC-CGag -5'
6347 3' -55.4 NC_001847.1 + 105770 0.68 0.80993
Target:  5'- cGCGGCGGCc---GCCUCggCGGCa- -3'
miRNA:   3'- uCGCUGCUGaacuCGGAGaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 18093 0.68 0.80993
Target:  5'- gGGCGA-GGCUUccGCCUCcUCGGCg- -3'
miRNA:   3'- -UCGCUgCUGAAcuCGGAGaAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 35910 0.68 0.800909
Target:  5'- uGgGACGGCgcguggGAGCCUUUguggCGGCg- -3'
miRNA:   3'- uCgCUGCUGaa----CUCGGAGAa---GCCGag -5'
6347 3' -55.4 NC_001847.1 + 114647 0.68 0.79173
Target:  5'- cGCGACGACgcgcGAGCCgUCUUC--CUCg -3'
miRNA:   3'- uCGCUGCUGaa--CUCGG-AGAAGccGAG- -5'
6347 3' -55.4 NC_001847.1 + 59245 0.69 0.772933
Target:  5'- cGGCGAUGGCgccggccaGGGCCaugaUUUGGCUCu -3'
miRNA:   3'- -UCGCUGCUGaa------CUCGGag--AAGCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 34082 0.69 0.763335
Target:  5'- cGCGGCGGCcccgGGGCCggCcUCGGCg- -3'
miRNA:   3'- uCGCUGCUGaa--CUCGGa-GaAGCCGag -5'
6347 3' -55.4 NC_001847.1 + 34110 0.69 0.763335
Target:  5'- cGCGGCGGCg-GAGCCUg--CGGCg- -3'
miRNA:   3'- uCGCUGCUGaaCUCGGAgaaGCCGag -5'
6347 3' -55.4 NC_001847.1 + 9870 0.69 0.753616
Target:  5'- uGCGACGGCUccUGccGCCUCUgccGCUCg -3'
miRNA:   3'- uCGCUGCUGA--ACu-CGGAGAagcCGAG- -5'
6347 3' -55.4 NC_001847.1 + 112683 0.69 0.753616
Target:  5'- uGCGACGGCUccUGccGCCUCUgccGCUCg -3'
miRNA:   3'- uCGCUGCUGA--ACu-CGGAGAagcCGAG- -5'
6347 3' -55.4 NC_001847.1 + 75738 0.69 0.753616
Target:  5'- cAGCGAUGACcgccGcGCCUCcgcCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGaa--CuCGGAGaa-GCCGAG- -5'
6347 3' -55.4 NC_001847.1 + 130260 0.69 0.753616
Target:  5'- uGCGACGACaaaaUGGGCUUCcgcgUGGCUg -3'
miRNA:   3'- uCGCUGCUGa---ACUCGGAGaa--GCCGAg -5'
6347 3' -55.4 NC_001847.1 + 88889 0.69 0.743786
Target:  5'- cGGCGGCGGCUcccGCCgggggCGGCUCc -3'
miRNA:   3'- -UCGCUGCUGAacuCGGagaa-GCCGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.