miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 132386 1.08 0.002117
Target:  5'- aAGAAGACGACGAGGCGCCCUCGCUCGc -3'
miRNA:   3'- -UCUUCUGCUGCUCCGCGGGAGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 94221 0.77 0.255453
Target:  5'- cGGAGcucGCGGCGGGGCGCCCgCGCggCGc -3'
miRNA:   3'- uCUUC---UGCUGCUCCGCGGGaGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 130113 0.77 0.255453
Target:  5'- -uGGGACGAguaCGAGaGCGCCCUCGCgcgCGa -3'
miRNA:   3'- ucUUCUGCU---GCUC-CGCGGGAGCGa--GC- -5'
6347 5' -58.3 NC_001847.1 + 81815 0.76 0.274048
Target:  5'- cGGAGGCGGCGGGGCGCgCCgucugUCGCcCGc -3'
miRNA:   3'- uCUUCUGCUGCUCCGCG-GG-----AGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 37190 0.76 0.293712
Target:  5'- cGGGAGAgccCGguGCGAGGCGCCCggugcCGCUUGg -3'
miRNA:   3'- -UCUUCU---GC--UGCUCCGCGGGa----GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 81074 0.75 0.321617
Target:  5'- cGAAGGCGGCGAcGGCGCuggcggcggCCUCGC-CGc -3'
miRNA:   3'- uCUUCUGCUGCU-CCGCG---------GGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 73866 0.75 0.307422
Target:  5'- uAGgcGGCGGCGcGGCGCCCgcgCGCgccgCGg -3'
miRNA:   3'- -UCuuCUGCUGCuCCGCGGGa--GCGa---GC- -5'
6347 5' -58.3 NC_001847.1 + 132697 0.75 0.321617
Target:  5'- cGggGACGGCGAGGCggcgGCCCU-GC-CGg -3'
miRNA:   3'- uCuuCUGCUGCUCCG----CGGGAgCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 23957 0.75 0.300506
Target:  5'- uGAAGACgGGCGAGaaGCCCUCGCUg- -3'
miRNA:   3'- uCUUCUG-CUGCUCcgCGGGAGCGAgc -5'
6347 5' -58.3 NC_001847.1 + 29884 0.75 0.321617
Target:  5'- cGggGACGGCGAGGCggcgGCCCU-GC-CGg -3'
miRNA:   3'- uCuuCUGCUGCUCCG----CGGGAgCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 50597 0.75 0.314459
Target:  5'- uGGAGcgcuGCGACGcGGGCGCCUUCGC-CGg -3'
miRNA:   3'- uCUUC----UGCUGC-UCCGCGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 129021 0.75 0.300506
Target:  5'- cGAuGGCGGCGAGGCGCucgcgccgcgCCUCGCgggCGu -3'
miRNA:   3'- uCUuCUGCUGCUCCGCG----------GGAGCGa--GC- -5'
6347 5' -58.3 NC_001847.1 + 77986 0.74 0.359217
Target:  5'- uGGcGGGCGGCGAGcGCGCCCUgcUGUUUGa -3'
miRNA:   3'- -UCuUCUGCUGCUC-CGCGGGA--GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 22498 0.73 0.425488
Target:  5'- gAGGAGGaaaGGCGGGGCGCUCUgGCagGg -3'
miRNA:   3'- -UCUUCUg--CUGCUCCGCGGGAgCGagC- -5'
6347 5' -58.3 NC_001847.1 + 87614 0.73 0.434272
Target:  5'- -uGAGACGGCGGcuuuGGCGCCCgggcugCGCUgGa -3'
miRNA:   3'- ucUUCUGCUGCU----CCGCGGGa-----GCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 71074 0.72 0.4797
Target:  5'- cGAGGGCGGCGAGGCGgCCg-GC-Ca -3'
miRNA:   3'- uCUUCUGCUGCUCCGCgGGagCGaGc -5'
6347 5' -58.3 NC_001847.1 + 54711 0.72 0.4797
Target:  5'- gGGAGGACGACGcgcGGGUcCCCUUcCUCGa -3'
miRNA:   3'- -UCUUCUGCUGC---UCCGcGGGAGcGAGC- -5'
6347 5' -58.3 NC_001847.1 + 2143 0.72 0.461239
Target:  5'- cGAAGGCGAgCGccGGGCGCCaggGCUCGg -3'
miRNA:   3'- uCUUCUGCU-GC--UCCGCGGgagCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 125485 0.72 0.44316
Target:  5'- cGGcGGGCG-CGAGGaCGCCCggcUGCUCGa -3'
miRNA:   3'- -UCuUCUGCuGCUCC-GCGGGa--GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 118661 0.72 0.4797
Target:  5'- cGGGAGGCGcaagaGAGGUGUCCgCGCUCu -3'
miRNA:   3'- -UCUUCUGCug---CUCCGCGGGaGCGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.