miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 70249 0.66 0.7922
Target:  5'- gGGcGGGCGGCGGGcGCGCggCgUUGCUCu -3'
miRNA:   3'- -UCuUCUGCUGCUC-CGCG--GgAGCGAGc -5'
6347 5' -58.3 NC_001847.1 + 94494 0.66 0.809814
Target:  5'- cAGAAGGCcGCGAGGCGCgg-CGgaCGu -3'
miRNA:   3'- -UCUUCUGcUGCUCCGCGggaGCgaGC- -5'
6347 5' -58.3 NC_001847.1 + 68793 0.66 0.809814
Target:  5'- cGggGACGAucgccaCGGcGGCGCCCgCGCc-- -3'
miRNA:   3'- uCuuCUGCU------GCU-CCGCGGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 85154 0.66 0.809814
Target:  5'- ---cGGCGGCaacacGGCGCCCUCGUggcucUCGu -3'
miRNA:   3'- ucuuCUGCUGcu---CCGCGGGAGCG-----AGC- -5'
6347 5' -58.3 NC_001847.1 + 49246 0.66 0.801081
Target:  5'- ---cGGCGGgGuGGCGCCggcgaacgcgCUCGCUCa -3'
miRNA:   3'- ucuuCUGCUgCuCCGCGG----------GAGCGAGc -5'
6347 5' -58.3 NC_001847.1 + 44045 0.66 0.801081
Target:  5'- cGAGGcgcGCGuCGGGGcCGCCCU-GUUCGu -3'
miRNA:   3'- uCUUC---UGCuGCUCC-GCGGGAgCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 8460 0.66 0.801081
Target:  5'- cGGAGGCGGCGccGgGCCgggggcggCGCUCGg -3'
miRNA:   3'- uCUUCUGCUGCucCgCGGga------GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 92866 0.66 0.7922
Target:  5'- ---cGAgGACGuGGCGCCgCgcgaGCUCGa -3'
miRNA:   3'- ucuuCUgCUGCuCCGCGG-Gag--CGAGC- -5'
6347 5' -58.3 NC_001847.1 + 122015 0.66 0.7922
Target:  5'- cGGcAGGCGGCGcGGCGCCgCcCGCgCGc -3'
miRNA:   3'- -UCuUCUGCUGCuCCGCGG-GaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 111178 0.66 0.809814
Target:  5'- cGGAGGGCaGCGAGG-GCUuCUCGCcCGu -3'
miRNA:   3'- -UCUUCUGcUGCUCCgCGG-GAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 79756 0.66 0.809814
Target:  5'- cGuAGAUGACGAcGCuGUCCUCGC-CGa -3'
miRNA:   3'- uCuUCUGCUGCUcCG-CGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 110817 0.66 0.809814
Target:  5'- ----cGCGGCGuGGCGCgCCacCGCUCGc -3'
miRNA:   3'- ucuucUGCUGCuCCGCG-GGa-GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 46530 0.66 0.826801
Target:  5'- cGGggGGCGGCGGcGGCGCg--CGCg-- -3'
miRNA:   3'- -UCuuCUGCUGCU-CCGCGggaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 31476 0.66 0.826801
Target:  5'- ----cGCGugGAGGUGCUCUC-CUCc -3'
miRNA:   3'- ucuucUGCugCUCCGCGGGAGcGAGc -5'
6347 5' -58.3 NC_001847.1 + 4871 0.66 0.826801
Target:  5'- gGGggGGCGGCG-GGCagcggcaggGCCCcCGCg-- -3'
miRNA:   3'- -UCuuCUGCUGCuCCG---------CGGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 2075 0.66 0.826801
Target:  5'- cGguGGCGGCGA-GCGCCC-CGCg-- -3'
miRNA:   3'- uCuuCUGCUGCUcCGCGGGaGCGagc -5'
6347 5' -58.3 NC_001847.1 + 99567 0.66 0.826801
Target:  5'- uGAGGuuGGCcagcccGGCGCCCUCGUcgCGg -3'
miRNA:   3'- uCUUCugCUGcu----CCGCGGGAGCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 79599 0.66 0.826801
Target:  5'- cGggGGCGcCgGGGGCGUUgUCGC-CGg -3'
miRNA:   3'- uCuuCUGCuG-CUCCGCGGgAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 104445 0.66 0.81839
Target:  5'- cAGGAG-CGcCG-GGCuGCCCUCGuCUCc -3'
miRNA:   3'- -UCUUCuGCuGCuCCG-CGGGAGC-GAGc -5'
6347 5' -58.3 NC_001847.1 + 129258 0.66 0.81839
Target:  5'- ---cGACGGCGcGGcCGCCCUgCGCgcagCGc -3'
miRNA:   3'- ucuuCUGCUGCuCC-GCGGGA-GCGa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.