miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6347 5' -58.3 NC_001847.1 + 49246 0.66 0.801081
Target:  5'- ---cGGCGGgGuGGCGCCggcgaacgcgCUCGCUCa -3'
miRNA:   3'- ucuuCUGCUgCuCCGCGG----------GAGCGAGc -5'
6347 5' -58.3 NC_001847.1 + 124399 0.66 0.7922
Target:  5'- gAGggGGCcGCGGGGCcccGCCCcccuaaacUCGCUgGc -3'
miRNA:   3'- -UCuuCUGcUGCUCCG---CGGG--------AGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 134002 0.66 0.7922
Target:  5'- cGGAGccgcGCGcCGAGGCGCCgC-CGCUgGu -3'
miRNA:   3'- uCUUC----UGCuGCUCCGCGG-GaGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 21586 0.66 0.7922
Target:  5'- gAGggGGCcGCGGGGCcccGCCCcccuaaacUCGCUgGc -3'
miRNA:   3'- -UCuuCUGcUGCUCCG---CGGG--------AGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 92866 0.66 0.7922
Target:  5'- ---cGAgGACGuGGCGCCgCgcgaGCUCGa -3'
miRNA:   3'- ucuuCUgCUGCuCCGCGG-Gag--CGAGC- -5'
6347 5' -58.3 NC_001847.1 + 31189 0.66 0.7922
Target:  5'- cGGAGccgcGCGcCGAGGCGCCgC-CGCUgGu -3'
miRNA:   3'- uCUUC----UGCuGCUCCGCGG-GaGCGAgC- -5'
6347 5' -58.3 NC_001847.1 + 122015 0.66 0.7922
Target:  5'- cGGcAGGCGGCGcGGCGCCgCcCGCgCGc -3'
miRNA:   3'- -UCuUCUGCUGCuCCGCGG-GaGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 70249 0.66 0.7922
Target:  5'- gGGcGGGCGGCGGGcGCGCggCgUUGCUCu -3'
miRNA:   3'- -UCuUCUGCUGCUC-CGCG--GgAGCGAGc -5'
6347 5' -58.3 NC_001847.1 + 57725 0.66 0.7922
Target:  5'- ---cGACGACGAa--GCCCUCGCcCGu -3'
miRNA:   3'- ucuuCUGCUGCUccgCGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 51355 0.66 0.7922
Target:  5'- gGGuuGGCGAacaGGGGCGCuucgagggcugCCUCGC-CGg -3'
miRNA:   3'- -UCuuCUGCUg--CUCCGCG-----------GGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 124924 0.66 0.783178
Target:  5'- cGggGGCGacaGCGGGcGCGCCCUgGgCcCGg -3'
miRNA:   3'- uCuuCUGC---UGCUC-CGCGGGAgC-GaGC- -5'
6347 5' -58.3 NC_001847.1 + 17736 0.66 0.783178
Target:  5'- ---cGGCGuACGAGGCGgCCacggccucgCGCUCGc -3'
miRNA:   3'- ucuuCUGC-UGCUCCGCgGGa--------GCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 10349 0.66 0.783178
Target:  5'- gAGAAcGGCGGCGAGGgGgCCgcCGC-CGa -3'
miRNA:   3'- -UCUU-CUGCUGCUCCgCgGGa-GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 132330 0.66 0.783178
Target:  5'- cGGAGGugcCGGCGcggcuGGCGgCCgCGCUCGc -3'
miRNA:   3'- -UCUUCu--GCUGCu----CCGCgGGaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 115232 0.66 0.783178
Target:  5'- aGGucGGCGGCGA--CGCCCUCGUgCGc -3'
miRNA:   3'- -UCuuCUGCUGCUccGCGGGAGCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 103963 0.66 0.783178
Target:  5'- cGucGAUGGCGucGGCGCCCagCGCggCGu -3'
miRNA:   3'- uCuuCUGCUGCu-CCGCGGGa-GCGa-GC- -5'
6347 5' -58.3 NC_001847.1 + 47974 0.66 0.783178
Target:  5'- uGGAGGAUGuuGAGGCuGUCgCUCGCg-- -3'
miRNA:   3'- -UCUUCUGCugCUCCG-CGG-GAGCGagc -5'
6347 5' -58.3 NC_001847.1 + 29517 0.66 0.783178
Target:  5'- cGGAGGugcCGGCGcggcuGGCGgCCgCGCUCGc -3'
miRNA:   3'- -UCUUCu--GCUGCu----CCGCgGGaGCGAGC- -5'
6347 5' -58.3 NC_001847.1 + 35965 0.66 0.783178
Target:  5'- cGAGGACcACGAgGGCGCCaaggCGCgCGc -3'
miRNA:   3'- uCUUCUGcUGCU-CCGCGGga--GCGaGC- -5'
6347 5' -58.3 NC_001847.1 + 22111 0.66 0.783178
Target:  5'- cGggGGCGacaGCGGGcGCGCCCUgGgCcCGg -3'
miRNA:   3'- uCuuCUGC---UGCUC-CGCGGGAgC-GaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.