miRNA display CGI


Results 1 - 20 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 132077 1.11 0.002381
Target:  5'- cUGCUGCACUACGAGCACAACCUGCGCc -3'
miRNA:   3'- -ACGACGUGAUGCUCGUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 130433 0.83 0.170449
Target:  5'- gGCUGUcuacacGC-ACGGGCACAGCCUGCGUu -3'
miRNA:   3'- aCGACG------UGaUGCUCGUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 74463 0.81 0.231784
Target:  5'- cGCUGCAgUACGAGCGgGGgCUGgGCg -3'
miRNA:   3'- aCGACGUgAUGCUCGUgUUgGACgCG- -5'
6348 3' -54.2 NC_001847.1 + 45213 0.8 0.237658
Target:  5'- cGCgaGCGCcgccGCGAGCGCGGCCUcGCGCg -3'
miRNA:   3'- aCGa-CGUGa---UGCUCGUGUUGGA-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 63065 0.8 0.262408
Target:  5'- aGCUGgGCgaggcGCGGGCGCAGCuuCUGCGCg -3'
miRNA:   3'- aCGACgUGa----UGCUCGUGUUG--GACGCG- -5'
6348 3' -54.2 NC_001847.1 + 88147 0.8 0.268257
Target:  5'- gGC-GCGCUucGCGAGCcccaaguACAGCCUGCGCc -3'
miRNA:   3'- aCGaCGUGA--UGCUCG-------UGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 97827 0.8 0.268914
Target:  5'- cGCUGUGCUcgGCGcGCGCGGgCUGCGCg -3'
miRNA:   3'- aCGACGUGA--UGCuCGUGUUgGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 21014 0.8 0.268914
Target:  5'- cGCgGCugUGCGGGCGac-CCUGCGCa -3'
miRNA:   3'- aCGaCGugAUGCUCGUguuGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 132982 0.79 0.275549
Target:  5'- cGCggGCGCUGCGAGacCugGugCUGCGCa -3'
miRNA:   3'- aCGa-CGUGAUGCUC--GugUugGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 116502 0.78 0.325679
Target:  5'- gGCgucGCGCUcgcCGAGCACcucuGCCUGCGCu -3'
miRNA:   3'- aCGa--CGUGAu--GCUCGUGu---UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 53593 0.78 0.341192
Target:  5'- aGCUGCGCggggccgGCGAGCuCGGCCgccgaacggaUGCGCa -3'
miRNA:   3'- aCGACGUGa------UGCUCGuGUUGG----------ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 132737 0.78 0.341192
Target:  5'- aGCgGCGCaGCGAGcCACGGCCgaGCGCg -3'
miRNA:   3'- aCGaCGUGaUGCUC-GUGUUGGa-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 56187 0.78 0.341192
Target:  5'- gGCUGC---GCGAGCGcCAGCCUGCGg -3'
miRNA:   3'- aCGACGugaUGCUCGU-GUUGGACGCg -5'
6348 3' -54.2 NC_001847.1 + 58781 0.78 0.349148
Target:  5'- gUGCUGCAgCUACG-GCAgGaacggacagcGCCUGCGCc -3'
miRNA:   3'- -ACGACGU-GAUGCuCGUgU----------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 120733 0.77 0.357234
Target:  5'- cGCgaccCGCUGCGAGCGgGGCCUcGCGCc -3'
miRNA:   3'- aCGac--GUGAUGCUCGUgUUGGA-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 40526 0.77 0.357234
Target:  5'- gGCUGCGC-GCGAcGCGCGACgUGCuGCg -3'
miRNA:   3'- aCGACGUGaUGCU-CGUGUUGgACG-CG- -5'
6348 3' -54.2 NC_001847.1 + 131407 0.77 0.365451
Target:  5'- cGCUGCACggccGCGuGCGCGccgugGCCgGCGCg -3'
miRNA:   3'- aCGACGUGa---UGCuCGUGU-----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 87252 0.77 0.365451
Target:  5'- gGCUGCGCcccgggcgcGCGGGCGCGcgcGCgCUGCGCg -3'
miRNA:   3'- aCGACGUGa--------UGCUCGUGU---UG-GACGCG- -5'
6348 3' -54.2 NC_001847.1 + 18511 0.77 0.373797
Target:  5'- gGCUGCcgaggccagcGCUGCGGGCGCGccGCCguccGCGCc -3'
miRNA:   3'- aCGACG----------UGAUGCUCGUGU--UGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 16690 0.77 0.373797
Target:  5'- gGCUGCGCggGCGAGC-CGGCagGCGCa -3'
miRNA:   3'- aCGACGUGa-UGCUCGuGUUGgaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.