miRNA display CGI


Results 1 - 20 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 611 0.71 0.711114
Target:  5'- cGCUcCGCaGCGGcGCGCGGCCcGCGCc -3'
miRNA:   3'- aCGAcGUGaUGCU-CGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 967 0.66 0.921473
Target:  5'- cGCUGCGCcggGCGucuauGCGcCGGCCcGCaGCa -3'
miRNA:   3'- aCGACGUGa--UGCu----CGU-GUUGGaCG-CG- -5'
6348 3' -54.2 NC_001847.1 + 1141 0.67 0.889667
Target:  5'- gGCgGCGCcucgGCGcgcggcuccggcAGCGCGGCC-GCGCa -3'
miRNA:   3'- aCGaCGUGa---UGC------------UCGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 1396 0.66 0.927079
Target:  5'- cGCUGCcgguACUcgcgcggcggcACGGGCACcGCggUGCGCg -3'
miRNA:   3'- aCGACG----UGA-----------UGCUCGUGuUGg-ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 1612 0.7 0.751608
Target:  5'- cGCggcGCACUGCGccgcGGCAgcACCgcgGCGCg -3'
miRNA:   3'- aCGa--CGUGAUGC----UCGUguUGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 1729 0.67 0.889667
Target:  5'- cGCcGCGCcGCG-GC-CAGCC-GCGCg -3'
miRNA:   3'- aCGaCGUGaUGCuCGuGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 1811 0.69 0.808795
Target:  5'- -cCUGCGCgcCGAGCGCGcucacguCCgGCGCg -3'
miRNA:   3'- acGACGUGauGCUCGUGUu------GGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 1894 0.72 0.637873
Target:  5'- uUGCccaGCGCcGCGAGCGCGugcgagagcccGCCgcgGCGCg -3'
miRNA:   3'- -ACGa--CGUGaUGCUCGUGU-----------UGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 1945 0.69 0.824849
Target:  5'- cGCgGCGCagagcuccuccaGCGAGgGCAGCCcGCGCc -3'
miRNA:   3'- aCGaCGUGa-----------UGCUCgUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 2073 0.66 0.93703
Target:  5'- aGCggugGCG--GCGAGCGCcccgcggGGCCcGCGCg -3'
miRNA:   3'- aCGa---CGUgaUGCUCGUG-------UUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 2149 0.66 0.924867
Target:  5'- -uUUGCGCUGCGcAGCACcaggucucgcagcGCCcGCGCc -3'
miRNA:   3'- acGACGUGAUGC-UCGUGu------------UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 2548 0.73 0.55399
Target:  5'- cGCUGCuCUccgGCGGGCugucuucggcGCGggcGCCUGCGCg -3'
miRNA:   3'- aCGACGuGA---UGCUCG----------UGU---UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 2789 0.68 0.867668
Target:  5'- gGCgGC-CUccagggccGCGAGCGCGGCCgccagccGCGCc -3'
miRNA:   3'- aCGaCGuGA--------UGCUCGUGUUGGa------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 2861 0.66 0.92653
Target:  5'- cGCUGCgACUcGCGGGCGuCGucgucggGCCggGUGCg -3'
miRNA:   3'- aCGACG-UGA-UGCUCGU-GU-------UGGa-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 3056 0.68 0.851867
Target:  5'- aGCacGCGCUcCGGGUGCGccGCCaGCGCg -3'
miRNA:   3'- aCGa-CGUGAuGCUCGUGU--UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 3157 0.66 0.937528
Target:  5'- gGCgGCGCgGCGGGCcGCcuCCaGCGCc -3'
miRNA:   3'- aCGaCGUGaUGCUCG-UGuuGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 3193 0.68 0.835219
Target:  5'- gGCgacgGCGCaGCGGuccgccagcucGCGCAGCCgcucGCGCg -3'
miRNA:   3'- aCGa---CGUGaUGCU-----------CGUGUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 3274 0.74 0.533446
Target:  5'- cGCcGCGCggccgGCGAGCACGGC--GCGCa -3'
miRNA:   3'- aCGaCGUGa----UGCUCGUGUUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 3307 0.69 0.790313
Target:  5'- gGCgaGCGCggcGCGGGCGCcgcuGCCgccgGCGCc -3'
miRNA:   3'- aCGa-CGUGa--UGCUCGUGu---UGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 3793 0.69 0.826596
Target:  5'- gUGCUGCACgacgGCGugccGGCACGgggcgucgGCCgcgaGCGUg -3'
miRNA:   3'- -ACGACGUGa---UGC----UCGUGU--------UGGa---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.