miRNA display CGI


Results 1 - 20 of 689 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 63065 0.8 0.262408
Target:  5'- aGCUGgGCgaggcGCGGGCGCAGCuuCUGCGCg -3'
miRNA:   3'- aCGACgUGa----UGCUCGUGUUG--GACGCG- -5'
6348 3' -54.2 NC_001847.1 + 61334 0.75 0.454475
Target:  5'- cGCUGCAgCgcgGCGAcCACGGCgUGCGCu -3'
miRNA:   3'- aCGACGU-Ga--UGCUcGUGUUGgACGCG- -5'
6348 3' -54.2 NC_001847.1 + 33841 0.75 0.473657
Target:  5'- cGCggGCGCgcaGAGCGCAGaggaCUGCGCg -3'
miRNA:   3'- aCGa-CGUGaugCUCGUGUUg---GACGCG- -5'
6348 3' -54.2 NC_001847.1 + 61938 0.66 0.937528
Target:  5'- cGCgucaGCgGCG-GCGCGGCCcGCGCg -3'
miRNA:   3'- aCGacg-UGaUGCuCGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 58781 0.78 0.349148
Target:  5'- gUGCUGCAgCUACG-GCAgGaacggacagcGCCUGCGCc -3'
miRNA:   3'- -ACGACGU-GAUGCuCGUgU----------UGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 40526 0.77 0.357234
Target:  5'- gGCUGCGC-GCGAcGCGCGACgUGCuGCg -3'
miRNA:   3'- aCGACGUGaUGCU-CGUGUUGgACG-CG- -5'
6348 3' -54.2 NC_001847.1 + 18511 0.77 0.373797
Target:  5'- gGCUGCcgaggccagcGCUGCGGGCGCGccGCCguccGCGCc -3'
miRNA:   3'- aCGACG----------UGAUGCUCGUGU--UGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 47864 0.77 0.373797
Target:  5'- gUGCUGCGCggGCGcGCGCAGCgC-GCGCg -3'
miRNA:   3'- -ACGACGUGa-UGCuCGUGUUG-GaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 85161 0.76 0.408451
Target:  5'- gGCUccucuCGCggaggGCGuGCACGGCCUGCGCg -3'
miRNA:   3'- aCGAc----GUGa----UGCuCGUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 50602 0.75 0.454475
Target:  5'- cGCUGCGacGCGGGCGCcuucGCCggGCGCa -3'
miRNA:   3'- aCGACGUgaUGCUCGUGu---UGGa-CGCG- -5'
6348 3' -54.2 NC_001847.1 + 36030 0.76 0.426514
Target:  5'- gGCUGCGCgcggACGAGCACuAC--GCGCg -3'
miRNA:   3'- aCGACGUGa---UGCUCGUGuUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 13418 0.77 0.373797
Target:  5'- uUGUaGCGCUcGCgGAGCGgGGCCUGCGCu -3'
miRNA:   3'- -ACGaCGUGA-UG-CUCGUgUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 88147 0.8 0.268257
Target:  5'- gGC-GCGCUucGCGAGCcccaaguACAGCCUGCGCc -3'
miRNA:   3'- aCGaCGUGA--UGCUCG-------UGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 49889 0.76 0.430183
Target:  5'- cUGCUGCACggcACGuGCugGGCCcggccgcgguggcgcUGCGCg -3'
miRNA:   3'- -ACGACGUGa--UGCuCGugUUGG---------------ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 97827 0.8 0.268914
Target:  5'- cGCUGUGCUcgGCGcGCGCGGgCUGCGCg -3'
miRNA:   3'- aCGACGUGA--UGCuCGUGUUgGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 89947 0.77 0.373797
Target:  5'- cGCUcGCGCUGCGAG-ACGACUgccaGCGCg -3'
miRNA:   3'- aCGA-CGUGAUGCUCgUGUUGGa---CGCG- -5'
6348 3' -54.2 NC_001847.1 + 132050 0.76 0.435722
Target:  5'- cGCgGC-CUGCcGGcCGCGGCCUGCGCg -3'
miRNA:   3'- aCGaCGuGAUGcUC-GUGUUGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 18565 0.75 0.464015
Target:  5'- cGCUGCGCccaGAGCGCAgauGCCcacgUGCGCc -3'
miRNA:   3'- aCGACGUGaugCUCGUGU---UGG----ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 21014 0.8 0.268914
Target:  5'- cGCgGCugUGCGGGCGac-CCUGCGCa -3'
miRNA:   3'- aCGaCGugAUGCUCGUguuGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 120733 0.77 0.357234
Target:  5'- cGCgaccCGCUGCGAGCGgGGCCUcGCGCc -3'
miRNA:   3'- aCGac--GUGAUGCUCGUgUUGGA-CGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.