Results 1 - 20 of 689 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6348 | 3' | -54.2 | NC_001847.1 | + | 63065 | 0.8 | 0.262408 |
Target: 5'- aGCUGgGCgaggcGCGGGCGCAGCuuCUGCGCg -3' miRNA: 3'- aCGACgUGa----UGCUCGUGUUG--GACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 61334 | 0.75 | 0.454475 |
Target: 5'- cGCUGCAgCgcgGCGAcCACGGCgUGCGCu -3' miRNA: 3'- aCGACGU-Ga--UGCUcGUGUUGgACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 33841 | 0.75 | 0.473657 |
Target: 5'- cGCggGCGCgcaGAGCGCAGaggaCUGCGCg -3' miRNA: 3'- aCGa-CGUGaugCUCGUGUUg---GACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 61938 | 0.66 | 0.937528 |
Target: 5'- cGCgucaGCgGCG-GCGCGGCCcGCGCg -3' miRNA: 3'- aCGacg-UGaUGCuCGUGUUGGaCGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 58781 | 0.78 | 0.349148 |
Target: 5'- gUGCUGCAgCUACG-GCAgGaacggacagcGCCUGCGCc -3' miRNA: 3'- -ACGACGU-GAUGCuCGUgU----------UGGACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 40526 | 0.77 | 0.357234 |
Target: 5'- gGCUGCGC-GCGAcGCGCGACgUGCuGCg -3' miRNA: 3'- aCGACGUGaUGCU-CGUGUUGgACG-CG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 18511 | 0.77 | 0.373797 |
Target: 5'- gGCUGCcgaggccagcGCUGCGGGCGCGccGCCguccGCGCc -3' miRNA: 3'- aCGACG----------UGAUGCUCGUGU--UGGa---CGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 47864 | 0.77 | 0.373797 |
Target: 5'- gUGCUGCGCggGCGcGCGCAGCgC-GCGCg -3' miRNA: 3'- -ACGACGUGa-UGCuCGUGUUG-GaCGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 85161 | 0.76 | 0.408451 |
Target: 5'- gGCUccucuCGCggaggGCGuGCACGGCCUGCGCg -3' miRNA: 3'- aCGAc----GUGa----UGCuCGUGUUGGACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 50602 | 0.75 | 0.454475 |
Target: 5'- cGCUGCGacGCGGGCGCcuucGCCggGCGCa -3' miRNA: 3'- aCGACGUgaUGCUCGUGu---UGGa-CGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 36030 | 0.76 | 0.426514 |
Target: 5'- gGCUGCGCgcggACGAGCACuAC--GCGCg -3' miRNA: 3'- aCGACGUGa---UGCUCGUGuUGgaCGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 13418 | 0.77 | 0.373797 |
Target: 5'- uUGUaGCGCUcGCgGAGCGgGGCCUGCGCu -3' miRNA: 3'- -ACGaCGUGA-UG-CUCGUgUUGGACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 88147 | 0.8 | 0.268257 |
Target: 5'- gGC-GCGCUucGCGAGCcccaaguACAGCCUGCGCc -3' miRNA: 3'- aCGaCGUGA--UGCUCG-------UGUUGGACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 49889 | 0.76 | 0.430183 |
Target: 5'- cUGCUGCACggcACGuGCugGGCCcggccgcgguggcgcUGCGCg -3' miRNA: 3'- -ACGACGUGa--UGCuCGugUUGG---------------ACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 97827 | 0.8 | 0.268914 |
Target: 5'- cGCUGUGCUcgGCGcGCGCGGgCUGCGCg -3' miRNA: 3'- aCGACGUGA--UGCuCGUGUUgGACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 89947 | 0.77 | 0.373797 |
Target: 5'- cGCUcGCGCUGCGAG-ACGACUgccaGCGCg -3' miRNA: 3'- aCGA-CGUGAUGCUCgUGUUGGa---CGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 132050 | 0.76 | 0.435722 |
Target: 5'- cGCgGC-CUGCcGGcCGCGGCCUGCGCg -3' miRNA: 3'- aCGaCGuGAUGcUC-GUGUUGGACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 18565 | 0.75 | 0.464015 |
Target: 5'- cGCUGCGCccaGAGCGCAgauGCCcacgUGCGCc -3' miRNA: 3'- aCGACGUGaugCUCGUGU---UGG----ACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 21014 | 0.8 | 0.268914 |
Target: 5'- cGCgGCugUGCGGGCGac-CCUGCGCa -3' miRNA: 3'- aCGaCGugAUGCUCGUguuGGACGCG- -5' |
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6348 | 3' | -54.2 | NC_001847.1 | + | 120733 | 0.77 | 0.357234 |
Target: 5'- cGCgaccCGCUGCGAGCGgGGCCUcGCGCc -3' miRNA: 3'- aCGac--GUGAUGCUCGUgUUGGA-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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