Results 1 - 20 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 5678 | 0.66 | 0.88272 |
Target: 5'- cGCGCGCGG-CGgcGGCCGCCagcucaaguagCCgcUUGg -3' miRNA: 3'- -CGCGCGUCuGCa-CUGGCGG-----------GGauAAC- -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 116613 | 0.66 | 0.860742 |
Target: 5'- uGCgGCGCGGACGgcGGCgCGCCCg----- -3' miRNA: 3'- -CG-CGCGUCUGCa-CUG-GCGGGgauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 49971 | 0.66 | 0.868282 |
Target: 5'- aCGCGCAGGcCGUG-CaCGCCCUc---- -3' miRNA: 3'- cGCGCGUCU-GCACuG-GCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 89512 | 0.66 | 0.860742 |
Target: 5'- uGCuGCGCAG-CGaGGcCCGCCCCa---- -3' miRNA: 3'- -CG-CGCGUCuGCaCU-GGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 105766 | 0.66 | 0.852995 |
Target: 5'- cGCGCGCGGcaGCuccGGCCGCCCg----- -3' miRNA: 3'- -CGCGCGUC--UGca-CUGGCGGGgauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 81874 | 0.66 | 0.852995 |
Target: 5'- cGCGCGCcuGGGCGcGcAgCGCCCCg---- -3' miRNA: 3'- -CGCGCG--UCUGCaC-UgGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 32053 | 0.66 | 0.852995 |
Target: 5'- cCGCGCGGGCucGGCgGCCCCc---- -3' miRNA: 3'- cGCGCGUCUGcaCUGgCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 98625 | 0.66 | 0.852995 |
Target: 5'- uCGCGCAG-CGUGcacACCGCCgCUu--- -3' miRNA: 3'- cGCGCGUCuGCAC---UGGCGGgGAuaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 22218 | 0.66 | 0.852995 |
Target: 5'- aCGCGUccguGGGCGUGG-CGCCCgUGUa- -3' miRNA: 3'- cGCGCG----UCUGCACUgGCGGGgAUAac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 66174 | 0.66 | 0.868282 |
Target: 5'- cCGgGCuGGCGccGGCCGCCCCc---- -3' miRNA: 3'- cGCgCGuCUGCa-CUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 73202 | 0.66 | 0.868282 |
Target: 5'- cCGCGCGGGCcgcGCCGCCgCUGa-- -3' miRNA: 3'- cGCGCGUCUGcacUGGCGGgGAUaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 42924 | 0.66 | 0.87561 |
Target: 5'- aGCGCGCGcuGC-UGGCCGCCCa----- -3' miRNA: 3'- -CGCGCGUc-UGcACUGGCGGGgauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 80617 | 0.66 | 0.88272 |
Target: 5'- uGCGCcccCGGACGgccCCGCCCCa---- -3' miRNA: 3'- -CGCGc--GUCUGCacuGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 75946 | 0.66 | 0.88272 |
Target: 5'- -gGCGCGGACGgcucgggcuacGACgGCCCCc---- -3' miRNA: 3'- cgCGCGUCUGCa----------CUGgCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 64703 | 0.66 | 0.88272 |
Target: 5'- aGUGCGuCAGGCGcgGcACCGCCaCCg---- -3' miRNA: 3'- -CGCGC-GUCUGCa-C-UGGCGG-GGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 58242 | 0.66 | 0.88272 |
Target: 5'- aGCG-GCGGcGCGcGACCGCCCUc---- -3' miRNA: 3'- -CGCgCGUC-UGCaCUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 61269 | 0.66 | 0.87561 |
Target: 5'- gGCGCcgGCGGAacUGACgCGCCCCg---- -3' miRNA: 3'- -CGCG--CGUCUgcACUG-GCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 56428 | 0.66 | 0.87561 |
Target: 5'- cGCGuCGCGGAa--GACCGCCCg----- -3' miRNA: 3'- -CGC-GCGUCUgcaCUGGCGGGgauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 129243 | 0.66 | 0.87561 |
Target: 5'- cGgGCGCAcaaucugcgacGGCGcGGCCGCCCUg---- -3' miRNA: 3'- -CgCGCGU-----------CUGCaCUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 85056 | 0.66 | 0.87561 |
Target: 5'- gGCGCgGCAGcCuUGGCCGCgCCCg---- -3' miRNA: 3'- -CGCG-CGUCuGcACUGGCG-GGGauaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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