miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 5678 0.66 0.88272
Target:  5'- cGCGCGCGG-CGgcGGCCGCCagcucaaguagCCgcUUGg -3'
miRNA:   3'- -CGCGCGUCuGCa-CUGGCGG-----------GGauAAC- -5'
6348 5' -56.6 NC_001847.1 + 116613 0.66 0.860742
Target:  5'- uGCgGCGCGGACGgcGGCgCGCCCg----- -3'
miRNA:   3'- -CG-CGCGUCUGCa-CUG-GCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 49971 0.66 0.868282
Target:  5'- aCGCGCAGGcCGUG-CaCGCCCUc---- -3'
miRNA:   3'- cGCGCGUCU-GCACuG-GCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 89512 0.66 0.860742
Target:  5'- uGCuGCGCAG-CGaGGcCCGCCCCa---- -3'
miRNA:   3'- -CG-CGCGUCuGCaCU-GGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 105766 0.66 0.852995
Target:  5'- cGCGCGCGGcaGCuccGGCCGCCCg----- -3'
miRNA:   3'- -CGCGCGUC--UGca-CUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 81874 0.66 0.852995
Target:  5'- cGCGCGCcuGGGCGcGcAgCGCCCCg---- -3'
miRNA:   3'- -CGCGCG--UCUGCaC-UgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 32053 0.66 0.852995
Target:  5'- cCGCGCGGGCucGGCgGCCCCc---- -3'
miRNA:   3'- cGCGCGUCUGcaCUGgCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 98625 0.66 0.852995
Target:  5'- uCGCGCAG-CGUGcacACCGCCgCUu--- -3'
miRNA:   3'- cGCGCGUCuGCAC---UGGCGGgGAuaac -5'
6348 5' -56.6 NC_001847.1 + 22218 0.66 0.852995
Target:  5'- aCGCGUccguGGGCGUGG-CGCCCgUGUa- -3'
miRNA:   3'- cGCGCG----UCUGCACUgGCGGGgAUAac -5'
6348 5' -56.6 NC_001847.1 + 66174 0.66 0.868282
Target:  5'- cCGgGCuGGCGccGGCCGCCCCc---- -3'
miRNA:   3'- cGCgCGuCUGCa-CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 73202 0.66 0.868282
Target:  5'- cCGCGCGGGCcgcGCCGCCgCUGa-- -3'
miRNA:   3'- cGCGCGUCUGcacUGGCGGgGAUaac -5'
6348 5' -56.6 NC_001847.1 + 42924 0.66 0.87561
Target:  5'- aGCGCGCGcuGC-UGGCCGCCCa----- -3'
miRNA:   3'- -CGCGCGUc-UGcACUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 80617 0.66 0.88272
Target:  5'- uGCGCcccCGGACGgccCCGCCCCa---- -3'
miRNA:   3'- -CGCGc--GUCUGCacuGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 75946 0.66 0.88272
Target:  5'- -gGCGCGGACGgcucgggcuacGACgGCCCCc---- -3'
miRNA:   3'- cgCGCGUCUGCa----------CUGgCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 64703 0.66 0.88272
Target:  5'- aGUGCGuCAGGCGcgGcACCGCCaCCg---- -3'
miRNA:   3'- -CGCGC-GUCUGCa-C-UGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 58242 0.66 0.88272
Target:  5'- aGCG-GCGGcGCGcGACCGCCCUc---- -3'
miRNA:   3'- -CGCgCGUC-UGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 61269 0.66 0.87561
Target:  5'- gGCGCcgGCGGAacUGACgCGCCCCg---- -3'
miRNA:   3'- -CGCG--CGUCUgcACUG-GCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 56428 0.66 0.87561
Target:  5'- cGCGuCGCGGAa--GACCGCCCg----- -3'
miRNA:   3'- -CGC-GCGUCUgcaCUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 129243 0.66 0.87561
Target:  5'- cGgGCGCAcaaucugcgacGGCGcGGCCGCCCUg---- -3'
miRNA:   3'- -CgCGCGU-----------CUGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 85056 0.66 0.87561
Target:  5'- gGCGCgGCAGcCuUGGCCGCgCCCg---- -3'
miRNA:   3'- -CGCG-CGUCuGcACUGGCG-GGGauaac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.