miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 132116 1.11 0.001766
Target:  5'- gGCGCGCAGACGUGACCGCCCCUAUUGg -3'
miRNA:   3'- -CGCGCGUCUGCACUGGCGGGGAUAAC- -5'
6348 5' -56.6 NC_001847.1 + 88367 0.78 0.256795
Target:  5'- gGCGCGCGGGCGcggcgGACCGgCCCCg---- -3'
miRNA:   3'- -CGCGCGUCUGCa----CUGGC-GGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 61275 0.77 0.282334
Target:  5'- cGCGCGCGGGCGccgcGCCGCCgCCUAg-- -3'
miRNA:   3'- -CGCGCGUCUGCac--UGGCGG-GGAUaac -5'
6348 5' -56.6 NC_001847.1 + 48937 0.76 0.331787
Target:  5'- cGgGCGCAGGCGcgcgacugGACCGCCCCc---- -3'
miRNA:   3'- -CgCGCGUCUGCa-------CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 103462 0.75 0.362785
Target:  5'- -aGCGCAGACacGGCCGCCCUUAg-- -3'
miRNA:   3'- cgCGCGUCUGcaCUGGCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 33654 0.75 0.362785
Target:  5'- cGCGCGCGcGCGUGGCCGCggCCCg---- -3'
miRNA:   3'- -CGCGCGUcUGCACUGGCG--GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 41511 0.75 0.379021
Target:  5'- aGCGUGCAGACGUccgcGGCCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUGCA----CUGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 61023 0.75 0.395737
Target:  5'- cGCGCGUcacauccccGGGCGcGGCCGCCCCg---- -3'
miRNA:   3'- -CGCGCG---------UCUGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 110813 0.74 0.412921
Target:  5'- cGCGCGCGG-CGUGGCgCGCCaCCg---- -3'
miRNA:   3'- -CGCGCGUCuGCACUG-GCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 74489 0.74 0.412921
Target:  5'- aGgGCGCGGACGcGGCCGCgcgcaCCCUcgUGc -3'
miRNA:   3'- -CgCGCGUCUGCaCUGGCG-----GGGAuaAC- -5'
6348 5' -56.6 NC_001847.1 + 88547 0.74 0.430558
Target:  5'- uGUGCGCGuGGCGUGACCGCgCUCg---- -3'
miRNA:   3'- -CGCGCGU-CUGCACUGGCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 129397 0.74 0.439541
Target:  5'- gGCGCGcCGGACGgcgGugCGuCCCCUGa-- -3'
miRNA:   3'- -CGCGC-GUCUGCa--CugGC-GGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 1287 0.74 0.448629
Target:  5'- gGCgGCGCGGugGcUGGCCGCCUCg---- -3'
miRNA:   3'- -CG-CGCGUCugC-ACUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 104100 0.74 0.448629
Target:  5'- gGCgGCGCGGugGcUGGCCGCCUCg---- -3'
miRNA:   3'- -CG-CGCGUCugC-ACUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 85090 0.74 0.457821
Target:  5'- cGCGCGCGGACccgcGGCCGCCaCCg---- -3'
miRNA:   3'- -CGCGCGUCUGca--CUGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 14906 0.73 0.48598
Target:  5'- cGCGCGCAGGCc-GACUGCCUCg---- -3'
miRNA:   3'- -CGCGCGUCUGcaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 106956 0.73 0.495549
Target:  5'- gGCGCGCAGGCGcgcGGCCGCCag-GUa- -3'
miRNA:   3'- -CGCGCGUCUGCa--CUGGCGGggaUAac -5'
6348 5' -56.6 NC_001847.1 + 117403 0.73 0.505203
Target:  5'- aGCGCGaGGcCGUGGCCGCCUCg---- -3'
miRNA:   3'- -CGCGCgUCuGCACUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 38622 0.72 0.524745
Target:  5'- cGCGCGCGGucCGUuGCCGCCCaCUcgUc -3'
miRNA:   3'- -CGCGCGUCu-GCAcUGGCGGG-GAuaAc -5'
6348 5' -56.6 NC_001847.1 + 62727 0.72 0.534624
Target:  5'- cGCGuUGCGGcCGUGGCCGUCCCc---- -3'
miRNA:   3'- -CGC-GCGUCuGCACUGGCGGGGauaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.