miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 1124 0.71 0.595054
Target:  5'- uGCGaCGCuGGCGaGACCGCCCgUGa-- -3'
miRNA:   3'- -CGC-GCGuCUGCaCUGGCGGGgAUaac -5'
6348 5' -56.6 NC_001847.1 + 1287 0.74 0.448629
Target:  5'- gGCgGCGCGGugGcUGGCCGCCUCg---- -3'
miRNA:   3'- -CG-CGCGUCugC-ACUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 1641 0.67 0.811394
Target:  5'- gGCGCGCAGguacACGUGcGCCuGCCCg----- -3'
miRNA:   3'- -CGCGCGUC----UGCAC-UGG-CGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 1747 0.67 0.802553
Target:  5'- cGCGCGCAGAgGUacuccACCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUgCAc----UGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 2070 0.67 0.836906
Target:  5'- cGCaGCGguGGCGgcGAgCGCCCCg---- -3'
miRNA:   3'- -CG-CGCguCUGCa-CUgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 3726 0.68 0.784417
Target:  5'- cCGCGUAGcGCGcGGCCGCCUCg---- -3'
miRNA:   3'- cGCGCGUC-UGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 4521 0.72 0.564627
Target:  5'- cGUGCGCAcGACGUGccucgcggcgGCCGCCCgCgggUGg -3'
miRNA:   3'- -CGCGCGU-CUGCAC----------UGGCGGG-GauaAC- -5'
6348 5' -56.6 NC_001847.1 + 5678 0.66 0.88272
Target:  5'- cGCGCGCGG-CGgcGGCCGCCagcucaaguagCCgcUUGg -3'
miRNA:   3'- -CGCGCGUCuGCa-CUGGCGG-----------GGauAAC- -5'
6348 5' -56.6 NC_001847.1 + 5886 0.68 0.793558
Target:  5'- uGCGCGCAGG-GcGGCCGCgCCgucgcagAUUGu -3'
miRNA:   3'- -CGCGCGUCUgCaCUGGCGgGGa------UAAC- -5'
6348 5' -56.6 NC_001847.1 + 6322 0.66 0.88272
Target:  5'- uGCGCGCGGccACGUacgcGGgUGCCCCg---- -3'
miRNA:   3'- -CGCGCGUC--UGCA----CUgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 6359 0.68 0.793558
Target:  5'- cGCGcCGCGGGCGUaGCCGCUgCg---- -3'
miRNA:   3'- -CGC-GCGUCUGCAcUGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 8069 0.69 0.717101
Target:  5'- cGCGCGCAGAgGgggGcACCGCCgCg---- -3'
miRNA:   3'- -CGCGCGUCUgCa--C-UGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 9089 0.66 0.860742
Target:  5'- cGCGCGCGGG-GUG-CCGCUCUc---- -3'
miRNA:   3'- -CGCGCGUCUgCACuGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 10422 0.67 0.836906
Target:  5'- cCGCGCGGuucGCGcuGCCGCCCCc---- -3'
miRNA:   3'- cGCGCGUC---UGCacUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 10596 0.7 0.656438
Target:  5'- cGCGCGCGGGcCGgcgccgGcCCGCgCCCUGcUGg -3'
miRNA:   3'- -CGCGCGUCU-GCa-----CuGGCG-GGGAUaAC- -5'
6348 5' -56.6 NC_001847.1 + 10816 0.68 0.784417
Target:  5'- cGCGCGCAGGCGc-GCCuuGCCUCUc--- -3'
miRNA:   3'- -CGCGCGUCUGCacUGG--CGGGGAuaac -5'
6348 5' -56.6 NC_001847.1 + 12762 0.69 0.736837
Target:  5'- aGCGCGCAGuCGccGGCCGUCCg----- -3'
miRNA:   3'- -CGCGCGUCuGCa-CUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 12911 0.68 0.746572
Target:  5'- gGCG-GCAuGuACGUGGgCGCCCCUGa-- -3'
miRNA:   3'- -CGCgCGU-C-UGCACUgGCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 13123 0.72 0.534624
Target:  5'- gGCGCGCGGGCGgcGCCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUGCacUGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 13935 0.71 0.60526
Target:  5'- cGCGCcgcgGCAGGgG-GGCCGCCCCg---- -3'
miRNA:   3'- -CGCG----CGUCUgCaCUGGCGGGGauaac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.