Results 1 - 20 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6348 | 5' | -56.6 | NC_001847.1 | + | 1124 | 0.71 | 0.595054 |
Target: 5'- uGCGaCGCuGGCGaGACCGCCCgUGa-- -3' miRNA: 3'- -CGC-GCGuCUGCaCUGGCGGGgAUaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 1287 | 0.74 | 0.448629 |
Target: 5'- gGCgGCGCGGugGcUGGCCGCCUCg---- -3' miRNA: 3'- -CG-CGCGUCugC-ACUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 1641 | 0.67 | 0.811394 |
Target: 5'- gGCGCGCAGguacACGUGcGCCuGCCCg----- -3' miRNA: 3'- -CGCGCGUC----UGCAC-UGG-CGGGgauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 1747 | 0.67 | 0.802553 |
Target: 5'- cGCGCGCAGAgGUacuccACCGCgCCg---- -3' miRNA: 3'- -CGCGCGUCUgCAc----UGGCGgGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 2070 | 0.67 | 0.836906 |
Target: 5'- cGCaGCGguGGCGgcGAgCGCCCCg---- -3' miRNA: 3'- -CG-CGCguCUGCa-CUgGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 3726 | 0.68 | 0.784417 |
Target: 5'- cCGCGUAGcGCGcGGCCGCCUCg---- -3' miRNA: 3'- cGCGCGUC-UGCaCUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 4521 | 0.72 | 0.564627 |
Target: 5'- cGUGCGCAcGACGUGccucgcggcgGCCGCCCgCgggUGg -3' miRNA: 3'- -CGCGCGU-CUGCAC----------UGGCGGG-GauaAC- -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 5678 | 0.66 | 0.88272 |
Target: 5'- cGCGCGCGG-CGgcGGCCGCCagcucaaguagCCgcUUGg -3' miRNA: 3'- -CGCGCGUCuGCa-CUGGCGG-----------GGauAAC- -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 5886 | 0.68 | 0.793558 |
Target: 5'- uGCGCGCAGG-GcGGCCGCgCCgucgcagAUUGu -3' miRNA: 3'- -CGCGCGUCUgCaCUGGCGgGGa------UAAC- -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 6322 | 0.66 | 0.88272 |
Target: 5'- uGCGCGCGGccACGUacgcGGgUGCCCCg---- -3' miRNA: 3'- -CGCGCGUC--UGCA----CUgGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 6359 | 0.68 | 0.793558 |
Target: 5'- cGCGcCGCGGGCGUaGCCGCUgCg---- -3' miRNA: 3'- -CGC-GCGUCUGCAcUGGCGGgGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 8069 | 0.69 | 0.717101 |
Target: 5'- cGCGCGCAGAgGgggGcACCGCCgCg---- -3' miRNA: 3'- -CGCGCGUCUgCa--C-UGGCGGgGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 9089 | 0.66 | 0.860742 |
Target: 5'- cGCGCGCGGG-GUG-CCGCUCUc---- -3' miRNA: 3'- -CGCGCGUCUgCACuGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 10422 | 0.67 | 0.836906 |
Target: 5'- cCGCGCGGuucGCGcuGCCGCCCCc---- -3' miRNA: 3'- cGCGCGUC---UGCacUGGCGGGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 10596 | 0.7 | 0.656438 |
Target: 5'- cGCGCGCGGGcCGgcgccgGcCCGCgCCCUGcUGg -3' miRNA: 3'- -CGCGCGUCU-GCa-----CuGGCG-GGGAUaAC- -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 10816 | 0.68 | 0.784417 |
Target: 5'- cGCGCGCAGGCGc-GCCuuGCCUCUc--- -3' miRNA: 3'- -CGCGCGUCUGCacUGG--CGGGGAuaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 12762 | 0.69 | 0.736837 |
Target: 5'- aGCGCGCAGuCGccGGCCGUCCg----- -3' miRNA: 3'- -CGCGCGUCuGCa-CUGGCGGGgauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 12911 | 0.68 | 0.746572 |
Target: 5'- gGCG-GCAuGuACGUGGgCGCCCCUGa-- -3' miRNA: 3'- -CGCgCGU-C-UGCACUgGCGGGGAUaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 13123 | 0.72 | 0.534624 |
Target: 5'- gGCGCGCGGGCGgcGCCGCgCCg---- -3' miRNA: 3'- -CGCGCGUCUGCacUGGCGgGGauaac -5' |
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6348 | 5' | -56.6 | NC_001847.1 | + | 13935 | 0.71 | 0.60526 |
Target: 5'- cGCGCcgcgGCAGGgG-GGCCGCCCCg---- -3' miRNA: 3'- -CGCG----CGUCUgCaCUGGCGGGGauaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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