Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6349 | 5' | -56.6 | NC_001847.1 | + | 131009 | 1.08 | 0.002782 |
Target: 5'- cUCAGUGUCGACUCGCACGACCGCCUGu -3' miRNA: 3'- -AGUCACAGCUGAGCGUGCUGGCGGAC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 101560 | 0.77 | 0.315902 |
Target: 5'- gCAGgacgucGUCGGCaccgCGCACGGCCGCCUc -3' miRNA: 3'- aGUCa-----CAGCUGa---GCGUGCUGGCGGAc -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 66349 | 0.75 | 0.385804 |
Target: 5'- ----cGUCGgcccGCUCGCGCGGCCGCCg- -3' miRNA: 3'- agucaCAGC----UGAGCGUGCUGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 32895 | 0.72 | 0.542282 |
Target: 5'- aCGGUG-CGcGCcgCGCGCGAgCGCCUGg -3' miRNA: 3'- aGUCACaGC-UGa-GCGUGCUgGCGGAC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 19636 | 0.71 | 0.582432 |
Target: 5'- cCGGcGUCGg--CGCGCGGCCGCUUGc -3' miRNA: 3'- aGUCaCAGCugaGCGUGCUGGCGGAC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 55741 | 0.71 | 0.602746 |
Target: 5'- aCGGUGgucCGGCUCGCgcccgcGCGGCCGugcCCUGa -3' miRNA: 3'- aGUCACa--GCUGAGCG------UGCUGGC---GGAC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 131805 | 0.71 | 0.631317 |
Target: 5'- gCAGcGUCGGCauaacgcaccccUGCGCGGCCGCCUa -3' miRNA: 3'- aGUCaCAGCUGa-----------GCGUGCUGGCGGAc -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 19502 | 0.71 | 0.633361 |
Target: 5'- gUCGG-GUCGugUCGCGgGAUCGCgCUu -3' miRNA: 3'- -AGUCaCAGCugAGCGUgCUGGCG-GAc -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 58237 | 0.7 | 0.653778 |
Target: 5'- gCGGcagCGGCggCGCGCGACCGCCc- -3' miRNA: 3'- aGUCacaGCUGa-GCGUGCUGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 28830 | 0.7 | 0.673112 |
Target: 5'- gCGGUGgugCGGCUgcuagaaCGCGCGGCCGCg-- -3' miRNA: 3'- aGUCACa--GCUGA-------GCGUGCUGGCGgac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 102541 | 0.7 | 0.674127 |
Target: 5'- cUCcGUGUCGGC-CGCgACGGCgGCCg- -3' miRNA: 3'- -AGuCACAGCUGaGCG-UGCUGgCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 35932 | 0.69 | 0.704371 |
Target: 5'- --uGUGgCGGCgcgccgcCGCGCGGCCGCCUc -3' miRNA: 3'- aguCACaGCUGa------GCGUGCUGGCGGAc -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 134504 | 0.69 | 0.714343 |
Target: 5'- gUAGUGUgGGC-CGUGCGGCCGCg-- -3' miRNA: 3'- aGUCACAgCUGaGCGUGCUGGCGgac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 57889 | 0.69 | 0.724245 |
Target: 5'- -gGGUGUCGcccgccagcGCcCGCGCGACCGCg-- -3' miRNA: 3'- agUCACAGC---------UGaGCGUGCUGGCGgac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 53712 | 0.69 | 0.734068 |
Target: 5'- gUCuGUGggccggCGGCUgGCGCuGugCGCCUGc -3' miRNA: 3'- -AGuCACa-----GCUGAgCGUG-CugGCGGAC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 73191 | 0.69 | 0.743803 |
Target: 5'- gCGGaGUCGGCcCGCGCGggccgcGCCGCCg- -3' miRNA: 3'- aGUCaCAGCUGaGCGUGC------UGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 120121 | 0.68 | 0.75344 |
Target: 5'- cCGGcGgccgCGGCUCGCGCGGCC-CCa- -3' miRNA: 3'- aGUCaCa---GCUGAGCGUGCUGGcGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 47867 | 0.68 | 0.762972 |
Target: 5'- gCGGgccGUCGGCgCGCACGuCCGCgaGa -3' miRNA: 3'- aGUCa--CAGCUGaGCGUGCuGGCGgaC- -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 65504 | 0.68 | 0.762972 |
Target: 5'- gCGGUGUggggCGGCgcgCGCaguGCGGCCGCCc- -3' miRNA: 3'- aGUCACA----GCUGa--GCG---UGCUGGCGGac -5' |
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6349 | 5' | -56.6 | NC_001847.1 | + | 64110 | 0.68 | 0.781678 |
Target: 5'- --cGUGUCcgcggcgccaGACgcgUGCGCGGCCGCCg- -3' miRNA: 3'- aguCACAG----------CUGa--GCGUGCUGGCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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