miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 134850 0.67 0.861686
Target:  5'- gGCGCGgGGACG-GcgCcCGCGCggGCUc -3'
miRNA:   3'- -CGUGCgCCUGUaCuaGuGCGCGa-CGA- -5'
6350 3' -55.5 NC_001847.1 + 134819 0.7 0.726437
Target:  5'- -gACGCGGGCGUGGa-GCGCGaaGCUc -3'
miRNA:   3'- cgUGCGCCUGUACUagUGCGCgaCGA- -5'
6350 3' -55.5 NC_001847.1 + 134530 0.69 0.784552
Target:  5'- -gGCGCGGGCcg---CGCGCcGCUGCg -3'
miRNA:   3'- cgUGCGCCUGuacuaGUGCG-CGACGa -5'
6350 3' -55.5 NC_001847.1 + 133922 0.68 0.793801
Target:  5'- gGCcUGCGGGCGg---CGCGCGCUGg- -3'
miRNA:   3'- -CGuGCGCCUGUacuaGUGCGCGACga -5'
6350 3' -55.5 NC_001847.1 + 133792 0.66 0.910154
Target:  5'- gGCGCaaGGACAUGGcCGCGCaggGCgcgGCg -3'
miRNA:   3'- -CGUGcgCCUGUACUaGUGCG---CGa--CGa -5'
6350 3' -55.5 NC_001847.1 + 133553 0.67 0.876676
Target:  5'- cGCGCGCuGGCccGAgcgGCGCGCUgGCg -3'
miRNA:   3'- -CGUGCGcCUGuaCUag-UGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 133324 0.78 0.303433
Target:  5'- gGCGCGcCGGACGUGAgcgCgcucggcgcgcaggGCGUGCUGCUg -3'
miRNA:   3'- -CGUGC-GCCUGUACUa--G--------------UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 133232 0.68 0.811841
Target:  5'- cGCGCcgcgGCGGGCucucgCACGCGCUcGCg -3'
miRNA:   3'- -CGUG----CGCCUGuacuaGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 133142 0.7 0.685897
Target:  5'- uGCGCGUGGugGUGcUCuACGaccCGCUGCc -3'
miRNA:   3'- -CGUGCGCCugUACuAG-UGC---GCGACGa -5'
6350 3' -55.5 NC_001847.1 + 132980 0.69 0.736388
Target:  5'- -gGCGCGGGCGcugcGAgacCugGUGCUGCg -3'
miRNA:   3'- cgUGCGCCUGUa---CUa--GugCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 132828 0.66 0.910154
Target:  5'- cGCGCaGCGGGCGUGucgcCAUGgGCaGCc -3'
miRNA:   3'- -CGUG-CGCCUGUACua--GUGCgCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 132284 0.71 0.665315
Target:  5'- cGCGCGUcggccuGGGCGcUGGcgCGCGCGCUGUUc -3'
miRNA:   3'- -CGUGCG------CCUGU-ACUa-GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 132168 0.67 0.845847
Target:  5'- aGCGCGCGGcCccGG-CG-GCGCUGCg -3'
miRNA:   3'- -CGUGCGCCuGuaCUaGUgCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 132140 0.68 0.793801
Target:  5'- cGCgACGCGGugGag--CGCGCGCgGCUc -3'
miRNA:   3'- -CG-UGCGCCugUacuaGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 132116 0.76 0.358656
Target:  5'- gGCGCGCaGACGUGAcCGCcccuauugggcgGCGCUGCUg -3'
miRNA:   3'- -CGUGCGcCUGUACUaGUG------------CGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 132052 0.69 0.756
Target:  5'- cGCuauCGUGGGgGgcGUCAuCGCGCUGCUg -3'
miRNA:   3'- -CGu--GCGCCUgUacUAGU-GCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 131920 0.68 0.811841
Target:  5'- -gGCGCGGGCG-GcgCGCGagcgGCUGCg -3'
miRNA:   3'- cgUGCGCCUGUaCuaGUGCg---CGACGa -5'
6350 3' -55.5 NC_001847.1 + 131506 0.74 0.50206
Target:  5'- cGCugGUGGACcUGGUguaCGCGCGCcGCg -3'
miRNA:   3'- -CGugCGCCUGuACUA---GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 130744 0.72 0.617672
Target:  5'- aGgACGCGGACAgcgccugggccgcgGcgCGCGCGCUcGCg -3'
miRNA:   3'- -CgUGCGCCUGUa-------------CuaGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 130694 0.68 0.826652
Target:  5'- cCGCGCGGccuuucacgGCGUGcgcguuucccugcggCGCGCGCUGCc -3'
miRNA:   3'- cGUGCGCC---------UGUACua-------------GUGCGCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.