Results 41 - 60 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6350 | 3' | -55.5 | NC_001847.1 | + | 76443 | 0.66 | 0.89077 |
Target: 5'- cGCGCGCGGACuuu-UC-CGcCGCgGCa -3' miRNA: 3'- -CGUGCGCCUGuacuAGuGC-GCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 84288 | 0.66 | 0.89077 |
Target: 5'- gGCGCcCGGGCGccgaaGCGCGCUGUa -3' miRNA: 3'- -CGUGcGCCUGUacuagUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 82879 | 0.66 | 0.89077 |
Target: 5'- gGCGCGCGGGCAcgcGAgCACGaaGCgGCg -3' miRNA: 3'- -CGUGCGCCUGUa--CUaGUGCg-CGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 36093 | 0.66 | 0.89077 |
Target: 5'- gGCugGCGGAgCGcGGcgACGCGCUGg- -3' miRNA: 3'- -CGugCGCCU-GUaCUagUGCGCGACga -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 3916 | 0.66 | 0.89077 |
Target: 5'- -gGCGCGGACGcacgCACaGCGCUgGCa -3' miRNA: 3'- cgUGCGCCUGUacuaGUG-CGCGA-CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 109951 | 0.66 | 0.89077 |
Target: 5'- cGCGCGCgGGGCucg--CugGCcaGCUGCUa -3' miRNA: 3'- -CGUGCG-CCUGuacuaGugCG--CGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 29040 | 0.66 | 0.89077 |
Target: 5'- cGCGCGCGccGGCAg----ACGUGCUGCa -3' miRNA: 3'- -CGUGCGC--CUGUacuagUGCGCGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 85985 | 0.66 | 0.89077 |
Target: 5'- -gGCGCGuGAcCGUGGUcCGCGCGCcgauggGCUc -3' miRNA: 3'- cgUGCGC-CU-GUACUA-GUGCGCGa-----CGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 14622 | 0.66 | 0.89077 |
Target: 5'- aGCACGUGGuuuucgaccGCGgcgcUCGCGCGCcGCUc -3' miRNA: 3'- -CGUGCGCC---------UGUacu-AGUGCGCGaCGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 46591 | 0.66 | 0.89077 |
Target: 5'- cGCGCGCGaGCGcGGUCACGCcacGC-GCa -3' miRNA: 3'- -CGUGCGCcUGUaCUAGUGCG---CGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 120255 | 0.66 | 0.889402 |
Target: 5'- uGCGCGCGGACGgccccguaGCGUucGCUGUc -3' miRNA: 3'- -CGUGCGCCUGUacuag---UGCG--CGACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 105766 | 0.66 | 0.884541 |
Target: 5'- cGCGCGCGG-CAgcuccggccgcccgcGGUCGC-CGCUGUUu -3' miRNA: 3'- -CGUGCGCCuGUa--------------CUAGUGcGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 95952 | 0.66 | 0.883838 |
Target: 5'- cGCugGCGGGCGagcgUGAgcgCAgcagccgcugcCGCGgCUGCg -3' miRNA: 3'- -CGugCGCCUGU----ACUa--GU-----------GCGC-GACGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 29374 | 0.66 | 0.883838 |
Target: 5'- cCGCGCGGcgGCcgGAgcugcCGCGCGCgagGCc -3' miRNA: 3'- cGUGCGCC--UGuaCUa----GUGCGCGa--CGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 68745 | 0.66 | 0.883838 |
Target: 5'- cGCGcCGCGGAUGUGcgCGCGUGaugacauaGCUa -3' miRNA: 3'- -CGU-GCGCCUGUACuaGUGCGCga------CGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 35940 | 0.66 | 0.883838 |
Target: 5'- cGCGCGCuugcgccuGGGCGcUGcUgGCgGCGCUGCUg -3' miRNA: 3'- -CGUGCG--------CCUGU-ACuAgUG-CGCGACGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 38601 | 0.66 | 0.883838 |
Target: 5'- cGCGCGCGGcugcACAgccggCGCGCGCgGUc -3' miRNA: 3'- -CGUGCGCC----UGUacua-GUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 15005 | 0.66 | 0.883838 |
Target: 5'- aGCGCGCcggaGGACAaGGUCGCG-GCaaugGCUu -3' miRNA: 3'- -CGUGCG----CCUGUaCUAGUGCgCGa---CGA- -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 78311 | 0.66 | 0.883838 |
Target: 5'- -gGCGCGGcGCG-GcgCGCGCGCcGCg -3' miRNA: 3'- cgUGCGCC-UGUaCuaGUGCGCGaCGa -5' |
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6350 | 3' | -55.5 | NC_001847.1 | + | 87064 | 0.66 | 0.882423 |
Target: 5'- gGCA-GCGGACGUGuacuucuacgaCACGCGCccGCa -3' miRNA: 3'- -CGUgCGCCUGUACua---------GUGCGCGa-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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