miRNA display CGI


Results 61 - 80 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 105766 0.66 0.884541
Target:  5'- cGCGCGCGG-CAgcuccggccgcccgcGGUCGC-CGCUGUUu -3'
miRNA:   3'- -CGUGCGCCuGUa--------------CUAGUGcGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 105232 0.66 0.897469
Target:  5'- gGCGCGCGGGCAcaggCGgGCGCacuucggGCg -3'
miRNA:   3'- -CGUGCGCCUGUacuaGUgCGCGa------CGa -5'
6350 3' -55.5 NC_001847.1 + 104933 0.72 0.582563
Target:  5'- gGCGCGCGcGGCuucgGcgCGCGCGCcGCg -3'
miRNA:   3'- -CGUGCGC-CUGua--CuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 104652 0.67 0.837625
Target:  5'- cGCGCGCccgaGGGCcgcgccGAUCGCgucccaGCGCUGCa -3'
miRNA:   3'- -CGUGCG----CCUGua----CUAGUG------CGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 104432 0.67 0.876676
Target:  5'- cCGCGCGGGCGUccagGAgCGcCGgGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUA----CUaGU-GCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 104194 0.68 0.793801
Target:  5'- -aGCGCcGGCAg---CACGCGCUGCc -3'
miRNA:   3'- cgUGCGcCUGUacuaGUGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 104136 0.7 0.706296
Target:  5'- cGCGCGCcggcaacgccGGACAUGGUgcCGCuuCGCUGCUc -3'
miRNA:   3'- -CGUGCG----------CCUGUACUA--GUGc-GCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 103386 0.76 0.391766
Target:  5'- cGCGCGCGGguGCAcgcUGAcCACGCGCcGCUc -3'
miRNA:   3'- -CGUGCGCC--UGU---ACUaGUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 102989 0.67 0.845847
Target:  5'- cGCACGCcgucgcGGCGUGcgCGgGCGCgGCg -3'
miRNA:   3'- -CGUGCGc-----CUGUACuaGUgCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 102872 0.75 0.41787
Target:  5'- cCACGCGGACGgcgcGAgccacgCACGCGuCUGCg -3'
miRNA:   3'- cGUGCGCCUGUa---CUa-----GUGCGC-GACGa -5'
6350 3' -55.5 NC_001847.1 + 102507 0.68 0.811841
Target:  5'- uGCAgGCaGGGCA-GAgCGCGCGCcGCg -3'
miRNA:   3'- -CGUgCG-CCUGUaCUaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 102445 0.67 0.837625
Target:  5'- uGCACaGCGGGCA-GGUCGgGCGCc--- -3'
miRNA:   3'- -CGUG-CGCCUGUaCUAGUgCGCGacga -5'
6350 3' -55.5 NC_001847.1 + 102321 0.73 0.541816
Target:  5'- cCACGCGGGCc---UCGCGCGCUcGCg -3'
miRNA:   3'- cGUGCGCCUGuacuAGUGCGCGA-CGa -5'
6350 3' -55.5 NC_001847.1 + 102217 0.68 0.791042
Target:  5'- cGCGCGCGGgucgucggGCggGAcggcguccaggcgcUCGCGCGCgGCg -3'
miRNA:   3'- -CGUGCGCC--------UGuaCU--------------AGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 101485 0.68 0.793801
Target:  5'- cCGCGCGGGCcgcGGcCACGCGC-GCg -3'
miRNA:   3'- cGUGCGCCUGua-CUaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 101346 0.66 0.910154
Target:  5'- aGCGCGcCGGGCGc---CGCGCGCaGCc -3'
miRNA:   3'- -CGUGC-GCCUGUacuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 98726 0.67 0.876676
Target:  5'- gGCGCGCGucGCAgGGUCuGCGCGCgagUGCa -3'
miRNA:   3'- -CGUGCGCc-UGUaCUAG-UGCGCG---ACGa -5'
6350 3' -55.5 NC_001847.1 + 97839 0.72 0.592858
Target:  5'- cGCGCGCGGGCug---CGCGCGCcuuauacaaUGCUc -3'
miRNA:   3'- -CGUGCGCCUGuacuaGUGCGCG---------ACGA- -5'
6350 3' -55.5 NC_001847.1 + 97813 0.67 0.86929
Target:  5'- cGCGCGUGGccGCGUcGggCGCGUGCcGCc -3'
miRNA:   3'- -CGUGCGCC--UGUA-CuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 97373 0.67 0.876676
Target:  5'- ---aGUGGAgcUGAUCgcgaACGCGCUGCg -3'
miRNA:   3'- cgugCGCCUguACUAG----UGCGCGACGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.