miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 67350 0.71 0.650838
Target:  5'- uCGCGCGGACGUGGcccucggcUCuccguagcucgucCGCGCUGCc -3'
miRNA:   3'- cGUGCGCCUGUACU--------AGu------------GCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 77286 0.71 0.653943
Target:  5'- aGCGCGCGcGugGUGAUCggguacaGCGCcuucaugggguuGCUGCg -3'
miRNA:   3'- -CGUGCGC-CugUACUAG-------UGCG------------CGACGa -5'
6350 3' -55.5 NC_001847.1 + 59342 0.71 0.654978
Target:  5'- aUugGCGGcgGCGaGGUCGCGCGCcGCg -3'
miRNA:   3'- cGugCGCC--UGUaCUAGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 72052 0.71 0.654978
Target:  5'- cGCACGCGcGGCGguUGG-CGCGCagaaGCUGCg -3'
miRNA:   3'- -CGUGCGC-CUGU--ACUaGUGCG----CGACGa -5'
6350 3' -55.5 NC_001847.1 + 66569 0.71 0.654978
Target:  5'- uGCGCGCGGAac---UCGCGCGC-GCg -3'
miRNA:   3'- -CGUGCGCCUguacuAGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 28060 0.71 0.663249
Target:  5'- uGCugGCGGAaaaccugcccGGUCugGUGCUGUg -3'
miRNA:   3'- -CGugCGCCUgua-------CUAGugCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 65490 0.71 0.665315
Target:  5'- cCACGCGuACcgGGUCGCGgCGCgGCUg -3'
miRNA:   3'- cGUGCGCcUGuaCUAGUGC-GCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 63784 0.71 0.665315
Target:  5'- cCGCGCGGACGcgggcuuucUGGUCGCuguGCGCaaUGCUu -3'
miRNA:   3'- cGUGCGCCUGU---------ACUAGUG---CGCG--ACGA- -5'
6350 3' -55.5 NC_001847.1 + 79317 0.71 0.665315
Target:  5'- uGCGCGUcauGGACGacgacGUCACGCGaCUGCUc -3'
miRNA:   3'- -CGUGCG---CCUGUac---UAGUGCGC-GACGA- -5'
6350 3' -55.5 NC_001847.1 + 29471 0.71 0.665315
Target:  5'- cGCGCGUcggccuGGGCGcUGGcgCGCGCGCUGUUc -3'
miRNA:   3'- -CGUGCG------CCUGU-ACUa-GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 3913 0.71 0.665315
Target:  5'- -aGCGCGGGCGccGGUUGCGCGCccGCg -3'
miRNA:   3'- cgUGCGCCUGUa-CUAGUGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 106726 0.71 0.665315
Target:  5'- -aGCGCGGGCGccGGUUGCGCGCccGCg -3'
miRNA:   3'- cgUGCGCCUGUa-CUAGUGCGCGa-CGa -5'
6350 3' -55.5 NC_001847.1 + 132284 0.71 0.665315
Target:  5'- cGCGCGUcggccuGGGCGcUGGcgCGCGCGCUGUUc -3'
miRNA:   3'- -CGUGCG------CCUGU-ACUa-GUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 82566 0.7 0.675624
Target:  5'- cGCGCGCGGuACAcgGAgCGCGUGC-GCg -3'
miRNA:   3'- -CGUGCGCC-UGUa-CUaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 13123 0.7 0.685897
Target:  5'- gGCGCGCGGGCG-GcgC-CGCGCcGCc -3'
miRNA:   3'- -CGUGCGCCUGUaCuaGuGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 44908 0.7 0.685897
Target:  5'- cGgACGgGGGCGUGcgCgacGCGCGCgUGCUg -3'
miRNA:   3'- -CgUGCgCCUGUACuaG---UGCGCG-ACGA- -5'
6350 3' -55.5 NC_001847.1 + 71952 0.7 0.685897
Target:  5'- cGCGCGCGGGCucgGccAUgGCGCGCgaccGCg -3'
miRNA:   3'- -CGUGCGCCUGua-C--UAgUGCGCGa---CGa -5'
6350 3' -55.5 NC_001847.1 + 109368 0.7 0.685897
Target:  5'- aGCACGCGGA-AUGggCGCaGCuggGCUGCg -3'
miRNA:   3'- -CGUGCGCCUgUACuaGUG-CG---CGACGa -5'
6350 3' -55.5 NC_001847.1 + 65002 0.7 0.685897
Target:  5'- uGCGCGCGaGCugcugGAUgGCGCGCaUGCg -3'
miRNA:   3'- -CGUGCGCcUGua---CUAgUGCGCG-ACGa -5'
6350 3' -55.5 NC_001847.1 + 30329 0.7 0.685897
Target:  5'- uGCGCGUGGugGUGcUCuACGaccCGCUGCc -3'
miRNA:   3'- -CGUGCGCCugUACuAG-UGC---GCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.