miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 3' -55.5 NC_001847.1 + 35500 0.68 0.811841
Target:  5'- cGCGCGCGGAggcCAcGG-CGCGCGCcgaGCg -3'
miRNA:   3'- -CGUGCGCCU---GUaCUaGUGCGCGa--CGa -5'
6350 3' -55.5 NC_001847.1 + 35665 0.68 0.810955
Target:  5'- --cCGCGGAUcgcgcUGAUCuuggccccgagcgGCGCGCUGCg -3'
miRNA:   3'- cguGCGCCUGu----ACUAG-------------UGCGCGACGa -5'
6350 3' -55.5 NC_001847.1 + 35872 0.67 0.837625
Target:  5'- cGCAUGUGGGCcgGcgCAaauauacuccCGCGCcgGCUg -3'
miRNA:   3'- -CGUGCGCCUGuaCuaGU----------GCGCGa-CGA- -5'
6350 3' -55.5 NC_001847.1 + 35940 0.66 0.883838
Target:  5'- cGCGCGCuugcgccuGGGCGcUGcUgGCgGCGCUGCUg -3'
miRNA:   3'- -CGUGCG--------CCUGU-ACuAgUG-CGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 36010 0.79 0.252523
Target:  5'- gGC-CGCGGGCGUGGUgCugGgGCUGCg -3'
miRNA:   3'- -CGuGCGCCUGUACUA-GugCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 36034 0.7 0.716403
Target:  5'- nCGCGCGGACGaGcacUACGCGCgGCUg -3'
miRNA:   3'- cGUGCGCCUGUaCua-GUGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 36093 0.66 0.89077
Target:  5'- gGCugGCGGAgCGcGGcgACGCGCUGg- -3'
miRNA:   3'- -CGugCGCCU-GUaCUagUGCGCGACga -5'
6350 3' -55.5 NC_001847.1 + 36364 0.68 0.820614
Target:  5'- cGCACGCGGcgccgccgcgGCccGGgcagCGCGCGCcGCg -3'
miRNA:   3'- -CGUGCGCC----------UGuaCUa---GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 36843 0.69 0.784552
Target:  5'- gGCugGCGGACGUGcgCuCG-GCgGCg -3'
miRNA:   3'- -CGugCGCCUGUACuaGuGCgCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 37028 0.69 0.765642
Target:  5'- cGCcCGCGGACcUGGUCGuggcCGCGCUcauggGCg -3'
miRNA:   3'- -CGuGCGCCUGuACUAGU----GCGCGA-----CGa -5'
6350 3' -55.5 NC_001847.1 + 37231 0.7 0.726437
Target:  5'- -gGCGCGGACGacccggcgGAcgGCGCGCUGUUc -3'
miRNA:   3'- cgUGCGCCUGUa-------CUagUGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 37328 0.68 0.829212
Target:  5'- gGCACGCGcccGACGcGGcCACGCGC-GCg -3'
miRNA:   3'- -CGUGCGC---CUGUaCUaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 37684 0.7 0.726437
Target:  5'- aGCGCGCGGcCcUGG-CGCG-GCUGCg -3'
miRNA:   3'- -CGUGCGCCuGuACUaGUGCgCGACGa -5'
6350 3' -55.5 NC_001847.1 + 37694 0.7 0.706296
Target:  5'- aCGCGCuGGACcucGUCacguGCGCGCUGCUg -3'
miRNA:   3'- cGUGCG-CCUGuacUAG----UGCGCGACGA- -5'
6350 3' -55.5 NC_001847.1 + 38020 0.69 0.756
Target:  5'- uCGCGCGGGugcUGUGggCGCGCGCcGCc -3'
miRNA:   3'- cGUGCGCCU---GUACuaGUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 38601 0.66 0.883838
Target:  5'- cGCGCGCGGcugcACAgccggCGCGCGCgGUc -3'
miRNA:   3'- -CGUGCGCC----UGUacua-GUGCGCGaCGa -5'
6350 3' -55.5 NC_001847.1 + 40128 0.74 0.454268
Target:  5'- uGCGCGUGGGCgaGUGAUUggacacauGCGCGCaGCUg -3'
miRNA:   3'- -CGUGCGCCUG--UACUAG--------UGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 40533 0.67 0.837625
Target:  5'- cGCgACGCGcGACGUGcugcggcaGCGCGCcGCUg -3'
miRNA:   3'- -CG-UGCGC-CUGUACuag-----UGCGCGaCGA- -5'
6350 3' -55.5 NC_001847.1 + 40884 0.68 0.82836
Target:  5'- uGCGCGUGGucguaggucgcaaACAUGggCACGCGg-GCa -3'
miRNA:   3'- -CGUGCGCC-------------UGUACuaGUGCGCgaCGa -5'
6350 3' -55.5 NC_001847.1 + 41135 0.7 0.695103
Target:  5'- -gGCGCGGACAUGGcgucgUCgaaccgcgagugaGCGCGCgGCg -3'
miRNA:   3'- cgUGCGCCUGUACU-----AG-------------UGCGCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.