miRNA display CGI


Results 121 - 140 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 79632 0.66 0.56588
Target:  5'- --cGCGGCgGGCGCCgccaGCAgCagGGCCc -3'
miRNA:   3'- ccuCGUCGaCCGCGGag--CGUgG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 74498 0.66 0.56588
Target:  5'- -cAGCAGCc-GCGCCU-GCGCCGcGCg -3'
miRNA:   3'- ccUCGUCGacCGCGGAgCGUGGC-CGg -5'
6350 5' -62.5 NC_001847.1 + 28347 0.66 0.579533
Target:  5'- cGGGGCcGCgcgcccgggcccccGGCGcCCUCGCcGCCGGagaCg -3'
miRNA:   3'- -CCUCGuCGa-------------CCGC-GGAGCG-UGGCCg--G- -5'
6350 5' -62.5 NC_001847.1 + 54691 0.66 0.579533
Target:  5'- cGGcGGCGGC-GGCGCCcgcggggaggacgaCGCGCgGGUCc -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGa-------------GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 72060 0.66 0.584427
Target:  5'- -cGGCGGUUGGCGCgcagaagCUgCGC-CCGcGCCu -3'
miRNA:   3'- ccUCGUCGACCGCG-------GA-GCGuGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 33107 0.66 0.59522
Target:  5'- cGGAGCAuggGCcgGGgGCCcCGUACCugcGGCg -3'
miRNA:   3'- -CCUCGU---CGa-CCgCGGaGCGUGG---CCGg -5'
6350 5' -62.5 NC_001847.1 + 28448 0.66 0.59522
Target:  5'- --cGCcGC-GGCGCCgCGCgACgGGCCg -3'
miRNA:   3'- ccuCGuCGaCCGCGGaGCG-UGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 433 0.66 0.59522
Target:  5'- cGGGCGGCggcGGCGgCggcaGCAgCGGCg -3'
miRNA:   3'- cCUCGUCGa--CCGCgGag--CGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 50833 0.66 0.59522
Target:  5'- gGGGGC-GCUGcccGCGCCgggggGCGCUGGUg -3'
miRNA:   3'- -CCUCGuCGAC---CGCGGag---CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 41817 0.66 0.594238
Target:  5'- aGGAcGUGGCgcgggauugGcGCGCCUacacacgCGCGCgCGGCCu -3'
miRNA:   3'- -CCU-CGUCGa--------C-CGCGGA-------GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 22488 0.66 0.592273
Target:  5'- uGGGGCaaGGCUGGCcguggcucauggcgGCggCGgGCCgGGCCg -3'
miRNA:   3'- -CCUCG--UCGACCG--------------CGgaGCgUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 100350 0.66 0.585407
Target:  5'- -cAGCGGCcgcgGGUcguaGCCgCGCGCCgcGGCCg -3'
miRNA:   3'- ccUCGUCGa---CCG----CGGaGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 87348 0.66 0.585407
Target:  5'- uGGAGCcgaucGCgGGCGCCgaggcCGaCGCgUGGCCc -3'
miRNA:   3'- -CCUCGu----CGaCCGCGGa----GC-GUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 69388 0.66 0.585407
Target:  5'- --cGCAGCUuGCGCC-CGCG--GGCCa -3'
miRNA:   3'- ccuCGUCGAcCGCGGaGCGUggCCGG- -5'
6350 5' -62.5 NC_001847.1 + 2293 0.66 0.585407
Target:  5'- -cGGCGGCggGGcCGCCgggCgGCAUgGGCCc -3'
miRNA:   3'- ccUCGUCGa-CC-GCGGa--G-CGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 128121 0.66 0.585407
Target:  5'- -uGGC-GCUGGCGCUggcggaUGCG-CGGCCg -3'
miRNA:   3'- ccUCGuCGACCGCGGa-----GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 107701 0.66 0.585407
Target:  5'- --uGCGGUUGGCgGCgCUCGCggGCgGGCa -3'
miRNA:   3'- ccuCGUCGACCG-CG-GAGCG--UGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 62502 0.66 0.585407
Target:  5'- -uAGUAGUUGGCGCCcacaaagugCgGCACgGGCg -3'
miRNA:   3'- ccUCGUCGACCGCGGa--------G-CGUGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 59545 0.66 0.585407
Target:  5'- -cGGCAGCUGGCuggugcuggGCCUggaGCacuuuuuuuuGCCGGCg -3'
miRNA:   3'- ccUCGUCGACCG---------CGGAg--CG----------UGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 44718 0.66 0.585407
Target:  5'- aGGGUAGCgggaagGGCGCCgccUCGUgGCCcGCCa -3'
miRNA:   3'- cCUCGUCGa-----CCGCGG---AGCG-UGGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.