miRNA display CGI


Results 141 - 160 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 100350 0.66 0.585407
Target:  5'- -cAGCGGCcgcgGGUcguaGCCgCGCGCCgcGGCCg -3'
miRNA:   3'- ccUCGUCGa---CCG----CGGaGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 87348 0.66 0.585407
Target:  5'- uGGAGCcgaucGCgGGCGCCgaggcCGaCGCgUGGCCc -3'
miRNA:   3'- -CCUCGu----CGaCCGCGGa----GC-GUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 69388 0.66 0.585407
Target:  5'- --cGCAGCUuGCGCC-CGCG--GGCCa -3'
miRNA:   3'- ccuCGUCGAcCGCGGaGCGUggCCGG- -5'
6350 5' -62.5 NC_001847.1 + 50833 0.66 0.59522
Target:  5'- gGGGGC-GCUGcccGCGCCgggggGCGCUGGUg -3'
miRNA:   3'- -CCUCGuCGAC---CGCGGag---CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 15383 0.67 0.517911
Target:  5'- cGGGGCGGUcGGCGUCg-GgGCUggGGCCg -3'
miRNA:   3'- -CCUCGUCGaCCGCGGagCgUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 102235 0.67 0.517911
Target:  5'- cGGGaCGGCguccaGGCG-CUCGCGCgCGGCg -3'
miRNA:   3'- cCUC-GUCGa----CCGCgGAGCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 84 0.67 0.524538
Target:  5'- cGGGCccgcucugGGCUccgccccuggguccGGCGCCccgCGCcCCGGCCc -3'
miRNA:   3'- cCUCG--------UCGA--------------CCGCGGa--GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 53386 0.67 0.525487
Target:  5'- aGGGCuAGCUgccGGCGCCgcaggcugaaccCGCA-CGGCCg -3'
miRNA:   3'- cCUCG-UCGA---CCGCGGa-----------GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 224 0.67 0.527387
Target:  5'- gGGGGCccgAGCccGG-GCCUCGCGCCccgacGCCc -3'
miRNA:   3'- -CCUCG---UCGa-CCgCGGAGCGUGGc----CGG- -5'
6350 5' -62.5 NC_001847.1 + 1970 0.67 0.517911
Target:  5'- cGGGCGGCgccgccaGCGCCUC-C-CCGGCa -3'
miRNA:   3'- cCUCGUCGac-----CGCGGAGcGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 73648 0.67 0.517911
Target:  5'- uGGAGCAGaucccggcguacCUGGaCGcCCUgGC-CCGcGCCa -3'
miRNA:   3'- -CCUCGUC------------GACC-GC-GGAgCGuGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 13249 0.67 0.517911
Target:  5'- cGGGGCcacGCgGGCGgUUCGCAggcaGGCCg -3'
miRNA:   3'- -CCUCGu--CGaCCGCgGAGCGUgg--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 99166 0.67 0.508504
Target:  5'- --cGCGGCugcgcgcgccuUGGCGCCcucgugguccUCGCGCgaggCGGCCg -3'
miRNA:   3'- ccuCGUCG-----------ACCGCGG----------AGCGUG----GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 123806 0.67 0.508504
Target:  5'- cGAGUGcucccGCUccGGCGCCagcCGCccGCCGGCCu -3'
miRNA:   3'- cCUCGU-----CGA--CCGCGGa--GCG--UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 16351 0.67 0.508504
Target:  5'- cGAGCAGC--GCGCC-CaGCA-CGGCCa -3'
miRNA:   3'- cCUCGUCGacCGCGGaG-CGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 132703 0.67 0.51414
Target:  5'- gGGAGCucgcugcGGCUGGCGCgaagcuuggcgaagCggCGCAgCGaGCCa -3'
miRNA:   3'- -CCUCG-------UCGACCGCG--------------Ga-GCGUgGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 66283 0.67 0.51414
Target:  5'- cGGGCGGCgcgaguaGGCGCCggauuuaacucaGCGCCcggGGCCc -3'
miRNA:   3'- cCUCGUCGa------CCGCGGag----------CGUGG---CCGG- -5'
6350 5' -62.5 NC_001847.1 + 30360 0.67 0.515082
Target:  5'- cGGGGaGGCgcuggcGGCGCCgcccggcgaggacgaGCGCCGGCg -3'
miRNA:   3'- -CCUCgUCGa-----CCGCGGag-------------CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 52231 0.67 0.517911
Target:  5'- cGAGaaaaAGCccccgGGCGCCgCGCGCCgcGGCUu -3'
miRNA:   3'- cCUCg---UCGa----CCGCGGaGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 37458 0.67 0.517911
Target:  5'- -cAGCAGCgGGCcugcguugGCCggGC-CCGGCCu -3'
miRNA:   3'- ccUCGUCGaCCG--------CGGagCGuGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.