miRNA display CGI


Results 161 - 180 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 37458 0.67 0.517911
Target:  5'- -cAGCAGCgGGCcugcguugGCCggGC-CCGGCCu -3'
miRNA:   3'- ccUCGUCGaCCG--------CGGagCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 29359 0.67 0.517911
Target:  5'- --cGCGGCcccggcGGCGCUgCGCGCCgaggcGGCCg -3'
miRNA:   3'- ccuCGUCGa-----CCGCGGaGCGUGG-----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 30360 0.67 0.515082
Target:  5'- cGGGGaGGCgcuggcGGCGCCgcccggcgaggacgaGCGCCGGCg -3'
miRNA:   3'- -CCUCgUCGa-----CCGCGGag-------------CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 66283 0.67 0.51414
Target:  5'- cGGGCGGCgcgaguaGGCGCCggauuuaacucaGCGCCcggGGCCc -3'
miRNA:   3'- cCUCGUCGa------CCGCGGag----------CGUGG---CCGG- -5'
6350 5' -62.5 NC_001847.1 + 132703 0.67 0.51414
Target:  5'- gGGAGCucgcugcGGCUGGCGCgaagcuuggcgaagCggCGCAgCGaGCCa -3'
miRNA:   3'- -CCUCG-------UCGACCGCG--------------Ga-GCGUgGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 123806 0.67 0.508504
Target:  5'- cGAGUGcucccGCUccGGCGCCagcCGCccGCCGGCCu -3'
miRNA:   3'- cCUCGU-----CGA--CCGCGGa--GCG--UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 53386 0.67 0.525487
Target:  5'- aGGGCuAGCUgccGGCGCCgcaggcugaaccCGCA-CGGCCg -3'
miRNA:   3'- cCUCG-UCGA---CCGCGGa-----------GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 102235 0.67 0.517911
Target:  5'- cGGGaCGGCguccaGGCG-CUCGCGCgCGGCg -3'
miRNA:   3'- cCUC-GUCGa----CCGCgGAGCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 224 0.67 0.527387
Target:  5'- gGGGGCccgAGCccGG-GCCUCGCGCCccgacGCCc -3'
miRNA:   3'- -CCUCG---UCGa-CCgCGGAGCGUGGc----CGG- -5'
6350 5' -62.5 NC_001847.1 + 51677 0.67 0.536927
Target:  5'- aGGGCGGCguacgcGcGCGCCgucgCGCGCCGucGUCg -3'
miRNA:   3'- cCUCGUCGa-----C-CGCGGa---GCGUGGC--CGG- -5'
6350 5' -62.5 NC_001847.1 + 42175 0.67 0.536927
Target:  5'- -cGGguGCUGGCGgaaugcgaggcCUUCGCAgCGGaCCu -3'
miRNA:   3'- ccUCguCGACCGC-----------GGAGCGUgGCC-GG- -5'
6350 5' -62.5 NC_001847.1 + 101594 0.67 0.528338
Target:  5'- --cGCGGCgucugccgccucuucGGCGCC-CGCGCCcGGCg -3'
miRNA:   3'- ccuCGUCGa--------------CCGCGGaGCGUGG-CCGg -5'
6350 5' -62.5 NC_001847.1 + 65008 0.67 0.527387
Target:  5'- cGAGCuGCuggaUGGCGCgCaUGCGCaUGGCCg -3'
miRNA:   3'- cCUCGuCG----ACCGCG-GaGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 116659 0.67 0.527387
Target:  5'- cGGGCAcGCUGGUgGCCUgCGUguggguCCGGCg -3'
miRNA:   3'- cCUCGU-CGACCG-CGGA-GCGu-----GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 94155 0.67 0.527387
Target:  5'- cGGAGCAGgUGaGCGCg--GC-CCGGCg -3'
miRNA:   3'- -CCUCGUCgAC-CGCGgagCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 73748 0.67 0.527387
Target:  5'- aGGGCAGUUccaaGCGCCgggcggCgGCGCgGGCCg -3'
miRNA:   3'- cCUCGUCGAc---CGCGGa-----G-CGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 70308 0.67 0.527387
Target:  5'- --uGCAGggGGCGgCUCgGCACCaGGUCg -3'
miRNA:   3'- ccuCGUCgaCCGCgGAG-CGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 49905 0.67 0.527387
Target:  5'- --cGCAcCUGGCGCC----GCCGGCCg -3'
miRNA:   3'- ccuCGUcGACCGCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 42965 0.67 0.527387
Target:  5'- gGGGGgGGCgGGcCGCCg---GCCGGCCc -3'
miRNA:   3'- -CCUCgUCGaCC-GCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 50116 0.67 0.527387
Target:  5'- gGGGGCcgGGCUGGgGCUgu-CGCUGGCa -3'
miRNA:   3'- -CCUCG--UCGACCgCGGagcGUGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.