Results 81 - 100 of 879 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6350 | 5' | -62.5 | NC_001847.1 | + | 30727 | 0.74 | 0.205498 |
Target: 5'- cGGcGCAGU--GCGCCgCGCGCUGGCCc -3' miRNA: 3'- -CCuCGUCGacCGCGGaGCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 24942 | 0.74 | 0.210455 |
Target: 5'- -cAGCAGCUgGGCGgCUUGC-CCGGCa -3' miRNA: 3'- ccUCGUCGA-CCGCgGAGCGuGGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 28762 | 0.74 | 0.205498 |
Target: 5'- cGGAccuGCAGCUGGCgcGCCUgcUGCAgCGGCg -3' miRNA: 3'- -CCU---CGUCGACCG--CGGA--GCGUgGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 28418 | 0.74 | 0.210455 |
Target: 5'- cGGGCGcGCaaccGGCGCC-CGCGCUGGCUa -3' miRNA: 3'- cCUCGU-CGa---CCGCGGaGCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 126910 | 0.74 | 0.200642 |
Target: 5'- uGAG-AGCUGGCGCgggucccagggCUCGCACUcgGGCCa -3' miRNA: 3'- cCUCgUCGACCGCG-----------GAGCGUGG--CCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 14191 | 0.74 | 0.200642 |
Target: 5'- gGGAGgGGCUGGCGgCgggGCuggcggucagGCCGGCCg -3' miRNA: 3'- -CCUCgUCGACCGCgGag-CG----------UGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 30752 | 0.74 | 0.205498 |
Target: 5'- cGAGCGgcgcGCUGGCGCgCgcCGUGCUGGCCu -3' miRNA: 3'- cCUCGU----CGACCGCG-Ga-GCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 4977 | 0.74 | 0.200642 |
Target: 5'- gGGGGCAGCUGGgGU---GCGgCGGCCg -3' miRNA: 3'- -CCUCGUCGACCgCGgagCGUgGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 86131 | 0.74 | 0.195887 |
Target: 5'- -uGGCAGauCUGGUauuuaaCCUCGCGCCGGCCc -3' miRNA: 3'- ccUCGUC--GACCGc-----GGAGCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 55250 | 0.74 | 0.205498 |
Target: 5'- gGGAGCAcGCcgagcgcauUGGCGCCUuuuUGCGCgUGGCCu -3' miRNA: 3'- -CCUCGU-CG---------ACCGCGGA---GCGUG-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 133540 | 0.74 | 0.205498 |
Target: 5'- cGGcGCAGU--GCGCCgCGCGCUGGCCc -3' miRNA: 3'- -CCuCGUCGacCGCGGaGCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 50354 | 0.74 | 0.205498 |
Target: 5'- aGGGUaaAGCUGGCGCUggccggcgUCGCccuGCUGGCCg -3' miRNA: 3'- cCUCG--UCGACCGCGG--------AGCG---UGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 60504 | 0.74 | 0.220678 |
Target: 5'- -cAGCAGCUGcccCGCCUCGCGCgaGGCg -3' miRNA: 3'- ccUCGUCGACc--GCGGAGCGUGg-CCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 105953 | 0.74 | 0.205498 |
Target: 5'- gGGAGCccGGC-GGCGCCggcggCGCGgCgGGCCg -3' miRNA: 3'- -CCUCG--UCGaCCGCGGa----GCGU-GgCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 33879 | 0.74 | 0.200642 |
Target: 5'- --uGCAGgaGGCGCCgcCGCGCgUGGCCg -3' miRNA: 3'- ccuCGUCgaCCGCGGa-GCGUG-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 63419 | 0.74 | 0.195887 |
Target: 5'- gGGAGCGcacGC-GGCGCCggCGgGCCGGCg -3' miRNA: 3'- -CCUCGU---CGaCCGCGGa-GCgUGGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 128034 | 0.74 | 0.220678 |
Target: 5'- aGGAGCccGGCcgUGGCGCCUaCGUggucuccuacaACUGGCCc -3' miRNA: 3'- -CCUCG--UCG--ACCGCGGA-GCG-----------UGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 24097 | 0.74 | 0.200642 |
Target: 5'- uGAG-AGCUGGCGCgggucccagggCUCGCACUcgGGCCa -3' miRNA: 3'- cCUCgUCGACCGCG-----------GAGCGUGG--CCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 3140 | 0.74 | 0.205498 |
Target: 5'- gGGAGCccGGC-GGCGCCggcggCGCGgCgGGCCg -3' miRNA: 3'- -CCUCG--UCGaCCGCGGa----GCGU-GgCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 118443 | 0.74 | 0.220678 |
Target: 5'- uGGGGCuccuGCUGGUggcgGCCUCGUGCCugcggcgcaaGGCCc -3' miRNA: 3'- -CCUCGu---CGACCG----CGGAGCGUGG----------CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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